Showing: gatkreset
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GATK 4 tool?
gatk galaxy gatk4 written 4 months ago by alanari20
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How can I index a file with tabix?
freebayes galaxy gatk vcf variant written 9 months ago by eennadi0 • updated 9 months ago by Jennifer Hillman Jackson25k
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259
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fastQC results of WGS data
wgs gatk fastqc data quality variant written 9 months ago by 153244562970 • updated 9 months ago by Jennifer Hillman Jackson25k
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Unified Genotyper error
custom gatk genome sort annotation written 12 months ago by viktoria.evdokimova30 • updated 12 months ago by Jennifer Hillman Jackson25k
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Regarding program running in galaxy
gatk job error written 18 months ago by supinderkr10 • updated 18 months ago by Jennifer Hillman Jackson25k
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7 follow
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GATK (deprecated tools)
gatk galaxy written 19 months ago by apozhitkov60 • updated 5 months ago by gintotomticket0
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635
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HaplotypeCaller tool on galaxy
deprecated gatk galaxy written 20 months ago by ib70 • updated 20 months ago by Jennifer Hillman Jackson25k
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GATK in galaxy
gatk galaxy written 21 months ago by jeevanbio70 • updated 21 months ago by Jennifer Hillman Jackson25k
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GATK and c. elegans
gatk dbsnp c elegans written 21 months ago by peadams0 • updated 21 months ago by Jennifer Hillman Jackson25k
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GATK tools and reference genomes
gatk written 22 months ago by anamabrantesc0 • updated 22 months ago by Jennifer Hillman Jackson25k
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Realign_Target_Creator error running
gatk galaxy realign_target_creator written 22 months ago by abedkurdi100 • updated 22 months ago by Jennifer Hillman Jackson25k
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GATK Select Variants Reference Genome
custom gatk genome select variants build written 23 months ago by peve0 • updated 18 months ago by Guy Reeves1.0k
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Realigner Target Creator will not run?
sorting realignertargetcreator genome gatk snp written 24 months ago by frankie.north10 • updated 24 months ago by Jennifer Hillman Jackson25k
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SelectVariants and JEXL
gatk jexl selectvariants written 2.4 years ago by petersam0 • updated 2.4 years ago by Jennifer Hillman Jackson25k
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Count Covariates GATK error
gatk snp written 2.5 years ago by up6522140
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GATK pipeline for WGS samples
gatk illumina wgs written 2.5 years ago by bsmith0304650 • updated 2.5 years ago by Jennifer Hillman Jackson25k
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GATK in Galaxy Main
freebayes gatk galaxy tools main written 2.8 years ago by David Wilson30 • updated 2.8 years ago by Jennifer Hillman Jackson25k
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GATK pipeline / Mutect
gatk mutect written 2.9 years ago by Bogdan Tanasa20 • updated 2.9 years ago by Jennifer Hillman Jackson25k
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contig order b37
gatk alignment bwa written 3.0 years ago by jane190 • updated 3.0 years ago by Jennifer Hillman Jackson25k
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Mark Duplicate Reads Error- "Value was put into PairInfoMap more than once"
gatk bwa-mem written 3.1 years ago by JP20 • updated 3.1 years ago by Jennifer Hillman Jackson25k
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Problem with installation GATK
missing tool dependencies package picard gatk written 3.1 years ago by Noè0 • updated 3.1 years ago by Jennifer Hillman Jackson25k
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galaxy doesn't recognise dbSNP file I uploaded
gatk written 3.1 years ago by henryrobins30 • updated 3.1 years ago by Jennifer Hillman Jackson25k
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