Showing: gatkreset
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How can I index a file with tabix?
freebayes galaxy gatk vcf variant written 3 months ago by eennadi0 • updated 3 months ago by Jennifer Hillman Jackson24k
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fastQC results of WGS data
wgs gatk fastqc data quality variant written 3 months ago by 153244562970 • updated 3 months ago by Jennifer Hillman Jackson24k
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Unified Genotyper error
custom gatk genome sort annotation written 6 months ago by viktoria.evdokimova30 • updated 6 months ago by Jennifer Hillman Jackson24k
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Regarding program running in galaxy
gatk job error written 12 months ago by supinderkr10 • updated 12 months ago by Jennifer Hillman Jackson24k
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444
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HaplotypeCaller tool on galaxy
deprecated gatk galaxy written 14 months ago by ib70 • updated 14 months ago by Jennifer Hillman Jackson24k
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GATK in galaxy
gatk galaxy written 15 months ago by jeevanbio70 • updated 15 months ago by Jennifer Hillman Jackson24k
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GATK and c. elegans
gatk dbsnp c elegans written 15 months ago by peadams0 • updated 15 months ago by Jennifer Hillman Jackson24k
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GATK tools and reference genomes
gatk written 16 months ago by anamabrantesc0 • updated 16 months ago by Jennifer Hillman Jackson24k
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Realign_Target_Creator error running
gatk galaxy realign_target_creator written 16 months ago by abedkurdi100 • updated 16 months ago by Jennifer Hillman Jackson24k
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GATK Select Variants Reference Genome
custom gatk genome select variants build written 17 months ago by peve0 • updated 12 months ago by Guy Reeves1.0k
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Realigner Target Creator will not run?
sorting realignertargetcreator genome gatk snp written 18 months ago by frankie.north10 • updated 18 months ago by Jennifer Hillman Jackson24k
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SelectVariants and JEXL
gatk jexl selectvariants written 22 months ago by petersam0 • updated 22 months ago by Jennifer Hillman Jackson24k
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Count Covariates GATK error
gatk snp written 2.0 years ago by up6522140
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GATK pipeline for WGS samples
gatk illumina wgs written 2.0 years ago by bsmith0304650 • updated 2.0 years ago by Jennifer Hillman Jackson24k
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GATK pipeline / Mutect
gatk mutect written 2.4 years ago by Bogdan Tanasa20 • updated 2.4 years ago by Jennifer Hillman Jackson24k
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contig order b37
gatk alignment bwa written 2.5 years ago by jane190 • updated 2.5 years ago by Jennifer Hillman Jackson24k
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Mark Duplicate Reads Error- "Value was put into PairInfoMap more than once"
gatk bwa-mem written 2.6 years ago by JP20 • updated 2.6 years ago by Jennifer Hillman Jackson24k
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Problem with installation GATK
missing tool dependencies package picard gatk written 2.6 years ago by No√®0 • updated 2.6 years ago by Jennifer Hillman Jackson24k
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galaxy doesn't recognise dbSNP file I uploaded
gatk written 2.6 years ago by henryrobins30 • updated 2.6 years ago by Jennifer Hillman Jackson24k
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Import .fasta dataset to NGS: GATK
gatk fasta written 2.8 years ago by regina.casanova.900 • updated 2.7 years ago by Jennifer Hillman Jackson24k
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