Showing: gatkreset
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4
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89
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Unified Genotyper error
custom gatk genome sort annotation written 9 weeks ago by viktoria.evdokimova30 • updated 9 weeks ago by Jennifer Hillman Jackson23k
1
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1
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124
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1
answer
0
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4
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615
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4
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GATK Select Variants Reference Genome
custom gatk genome select variants build written 13 months ago by peve0 • updated 8 months ago by Guy Reeves1.0k
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1
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163
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1
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Regarding program running in galaxy
gatk job error written 8 months ago by supinderkr0 • updated 8 months ago by Jennifer Hillman Jackson23k
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11
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1.5k
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11
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0
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1
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379
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1
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GATK in galaxy
gatk galaxy written 10 months ago by jeevanbio70 • updated 10 months ago by Jennifer Hillman Jackson23k
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1
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363
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1
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GATK and c. elegans
gatk dbsnp c elegans written 11 months ago by peadams0 • updated 11 months ago by Jennifer Hillman Jackson23k
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1
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265
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1
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GATK tools and reference genomes
gatk written 12 months ago by anamabrantesc0 • updated 12 months ago by Jennifer Hillman Jackson23k
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1
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388
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1
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Realign_Target_Creator error running
gatk galaxy realign_target_creator written 12 months ago by abedkurdi100 • updated 12 months ago by Jennifer Hillman Jackson23k
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1
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399
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1
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3
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0
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1.3k
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5 follow
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0
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1
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390
views
1
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Realigner Target Creator will not run?
sorting realignertargetcreator genome gatk snp written 14 months ago by frankie.north10 • updated 14 months ago by Jennifer Hillman Jackson23k
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3
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2.1k
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3
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GATK indel realigner using custom reference
indel realigner custom reference gatk written 3.3 years ago by laura0 • updated 16 months ago by vignes.gangboard0
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1
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412
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1
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SelectVariants and JEXL
gatk jexl selectvariants written 18 months ago by petersam0 • updated 18 months ago by Jennifer Hillman Jackson23k
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1
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377
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1
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0
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2
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477
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2
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Count Covariates GATK error
gatk snp written 20 months ago by up6522140
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1
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879
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1
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GATK pipeline for WGS samples
gatk illumina wgs written 20 months ago by bsmith0304650 • updated 20 months ago by Jennifer Hillman Jackson23k
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4
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856
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6 follow
4
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GATK 3 wrapper
gatk written 2.6 years ago by christophe.habib340
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1
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872
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1
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GATK pipeline / Mutect
gatk mutect written 2.0 years ago by Bogdan Tanasa20 • updated 2.0 years ago by Jennifer Hillman Jackson23k
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1
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2.1k
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1
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3
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4
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830
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4
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contig order b37
gatk alignment bwa written 2.1 years ago by jane190 • updated 2.1 years ago by Jennifer Hillman Jackson23k
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2
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1.2k
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2
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Realigner Target Creator in GATKtools
realigner realigner target creator gatk gatktools written 3.1 years ago by mltlbrt10 • updated 2.2 years ago by marcosp0
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1
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711
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1
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3
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1
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870
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1
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Mark Duplicate Reads Error- "Value was put into PairInfoMap more than once"
gatk bwa-mem written 2.2 years ago by JP20 • updated 2.2 years ago by Jennifer Hillman Jackson23k
1
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1
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678
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1
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Problem with installation GATK
missing tool dependencies package picard gatk written 2.2 years ago by Noè0 • updated 2.2 years ago by Jennifer Hillman Jackson23k
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1
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568
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1
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galaxy doesn't recognise dbSNP file I uploaded
gatk written 2.3 years ago by henryrobins30 • updated 2.3 years ago by Jennifer Hillman Jackson23k
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1
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635
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1
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Import .fasta dataset to NGS: GATK
gatk fasta written 2.4 years ago by regina.casanova.900 • updated 2.4 years ago by Jennifer Hillman Jackson23k
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1
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535
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8
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5
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1.4k
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6 follow
5
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0
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2
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1.6k
views
2
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Problem with Refreence Genome in Gatk Tools
referncegenome gatk galaxy gatktools written 3.2 years ago by mltlbrt10 • updated 2.4 years ago by regina.casanova.900
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2
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3.5k
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2
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0
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0
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762
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0
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GATK2 tools installation
local galaxy gatk written 2.5 years ago by Marc30
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633
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2
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0
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1
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848
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1
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GATK Haplotype Caller
gatk galaxy written 2.7 years ago by ecekartal890 • updated 2.6 years ago by Jennifer Hillman Jackson23k
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3
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995
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3
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