Showing: gatkreset
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4
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41
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Unified Genotyper error
custom gatk genome sort annotation written 10 days ago by viktoria.evdokimova30 • updated 9 days ago by Jennifer Hillman Jackson23k
1
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1
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80
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1
answer
0
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4
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534
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4
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GATK Select Variants Reference Genome
custom gatk genome select variants build written 11 months ago by peve0 • updated 6 months ago by Guy Reeves1.0k
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1
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125
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1
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Regarding program running in galaxy
gatk job error written 6 months ago by supinderkr0 • updated 6 months ago by Jennifer Hillman Jackson23k
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11
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1.4k
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11
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0
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1
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298
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1
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GATK in galaxy
gatk galaxy written 8 months ago by jeevanbio70 • updated 8 months ago by Jennifer Hillman Jackson23k
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1
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293
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1
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GATK and c. elegans
gatk dbsnp c elegans written 9 months ago by peadams0 • updated 9 months ago by Jennifer Hillman Jackson23k
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1
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217
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1
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GATK tools and reference genomes
gatk written 10 months ago by anamabrantesc0 • updated 10 months ago by Jennifer Hillman Jackson23k
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1
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330
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1
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Realign_Target_Creator error running
gatk galaxy realign_target_creator written 10 months ago by abedkurdi100 • updated 10 months ago by Jennifer Hillman Jackson23k
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1
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334
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1
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3
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0
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1.2k
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5 follow
0
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0
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1
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340
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1
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Realigner Target Creator will not run?
sorting realignertargetcreator genome gatk snp written 12 months ago by frankie.north10 • updated 12 months ago by Jennifer Hillman Jackson23k
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3
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2.0k
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3
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GATK indel realigner using custom reference
indel realigner custom reference gatk written 3.2 years ago by laura0 • updated 14 months ago by vignes.gangboard0
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1
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370
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1
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SelectVariants and JEXL
gatk jexl selectvariants written 16 months ago by petersam0 • updated 16 months ago by Jennifer Hillman Jackson23k
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1
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333
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1
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0
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2
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433
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2
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Count Covariates GATK error
gatk snp written 18 months ago by up6522140
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1
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811
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1
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GATK pipeline for WGS samples
gatk illumina wgs written 18 months ago by bsmith0304650 • updated 18 months ago by Jennifer Hillman Jackson23k
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4
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811
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6 follow
4
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GATK 3 wrapper
gatk written 2.4 years ago by christophe.habib330
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1
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799
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1
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GATK pipeline / Mutect
gatk mutect written 22 months ago by Bogdan Tanasa20 • updated 22 months ago by Jennifer Hillman Jackson23k
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1
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1.9k
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1
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3
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4
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749
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4
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contig order b37
gatk alignment bwa written 24 months ago by jane190 • updated 24 months ago by Jennifer Hillman Jackson23k
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2
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1.2k
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2
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Realigner Target Creator in GATKtools
realigner realigner target creator gatk gatktools written 2.9 years ago by mltlbrt10 • updated 2.0 years ago by marcosp0
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1
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654
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1
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3
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1
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789
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1
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Mark Duplicate Reads Error- "Value was put into PairInfoMap more than once"
gatk bwa-mem written 2.1 years ago by JP20 • updated 2.1 years ago by Jennifer Hillman Jackson23k
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1
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617
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1
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Problem with installation GATK
missing tool dependencies package picard gatk written 2.1 years ago by No√®0 • updated 2.1 years ago by Jennifer Hillman Jackson23k
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1
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518
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1
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galaxy doesn't recognise dbSNP file I uploaded
gatk written 2.1 years ago by henryrobins30 • updated 2.1 years ago by Jennifer Hillman Jackson23k
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1
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585
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1
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Import .fasta dataset to NGS: GATK
gatk fasta written 2.2 years ago by regina.casanova.900 • updated 2.2 years ago by Jennifer Hillman Jackson23k
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1
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491
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1
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8
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5
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1.3k
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6 follow
5
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0
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2
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1.5k
views
2
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Problem with Refreence Genome in Gatk Tools
referncegenome gatk galaxy gatktools written 3.0 years ago by mltlbrt10 • updated 2.2 years ago by regina.casanova.900
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2
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3.4k
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2
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0
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0
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676
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0
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GATK2 tools installation
local galaxy gatk written 2.3 years ago by Marc30
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581
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2
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0
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1
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767
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1
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GATK Haplotype Caller
gatk galaxy written 2.5 years ago by ecekartal890 • updated 2.5 years ago by Jennifer Hillman Jackson23k
2
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3
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916
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3
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