Showing: gatkreset
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GATK Select Variants Reference Genome
custom gatk genome select variants build written 9 months ago by peve0 • updated 4 months ago by Guy Reeves1000
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90
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Regarding program running in galaxy
gatk job error written 4 months ago by supinderkr0 • updated 4 months ago by Jennifer Hillman Jackson22k
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11
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11
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GATK in galaxy
gatk galaxy written 6 months ago by jeevanbio70 • updated 6 months ago by Jennifer Hillman Jackson22k
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229
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GATK and c. elegans
gatk dbsnp c elegans written 7 months ago by peadams0 • updated 7 months ago by Jennifer Hillman Jackson22k
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GATK tools and reference genomes
gatk written 8 months ago by anamabrantesc0 • updated 8 months ago by Jennifer Hillman Jackson22k
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250
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Realign_Target_Creator error running
gatk galaxy realign_target_creator written 8 months ago by abedkurdi100 • updated 8 months ago by Jennifer Hillman Jackson22k
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5 follow
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275
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Realigner Target Creator will not run?
sorting realignertargetcreator genome gatk snp written 10 months ago by frankie.north10 • updated 10 months ago by Jennifer Hillman Jackson22k
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GATK indel realigner using custom reference
indel realigner custom reference gatk written 3.0 years ago by laura0 • updated 12 months ago by vignes.gangboard0
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SelectVariants and JEXL
gatk jexl selectvariants written 14 months ago by petersam0 • updated 14 months ago by Jennifer Hillman Jackson22k
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299
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Count Covariates GATK error
gatk snp written 16 months ago by up6522140
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720
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GATK pipeline for WGS samples
gatk illumina wgs written 16 months ago by bsmith0304650 • updated 16 months ago by Jennifer Hillman Jackson22k
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6 follow
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GATK 3 wrapper
gatk written 2.2 years ago by christophe.habib330
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GATK pipeline / Mutect
gatk mutect written 20 months ago by Bogdan Tanasa20 • updated 20 months ago by Jennifer Hillman Jackson22k
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contig order b37
gatk alignment bwa written 22 months ago by jane190 • updated 22 months ago by Jennifer Hillman Jackson22k
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Realigner Target Creator in GATKtools
realigner realigner target creator gatk gatktools written 2.8 years ago by mltlbrt10 • updated 22 months ago by marcosp0
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Mark Duplicate Reads Error- "Value was put into PairInfoMap more than once"
gatk bwa-mem written 23 months ago by JP20 • updated 23 months ago by Jennifer Hillman Jackson22k
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Problem with installation GATK
missing tool dependencies package picard gatk written 23 months ago by Noè0 • updated 23 months ago by Jennifer Hillman Jackson22k
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galaxy doesn't recognise dbSNP file I uploaded
gatk written 23 months ago by henryrobins30 • updated 23 months ago by Jennifer Hillman Jackson22k
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533
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Import .fasta dataset to NGS: GATK
gatk fasta written 2.1 years ago by regina.casanova.900 • updated 2.1 years ago by Jennifer Hillman Jackson22k
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Problem with Refreence Genome in Gatk Tools
referncegenome gatk galaxy gatktools written 2.9 years ago by mltlbrt10 • updated 2.1 years ago by regina.casanova.900
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617
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GATK2 tools installation
local galaxy gatk written 2.1 years ago by Marc30
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533
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GATK Haplotype Caller
gatk galaxy written 2.4 years ago by ecekartal890 • updated 2.3 years ago by Jennifer Hillman Jackson22k
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How to use GATK on Galaxy
gatk help written 2.4 years ago by hachemi.zeraia0 • updated 2.4 years ago by Guy Reeves1000
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