Showing: gatkreset
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GATK in galaxy
gatk galaxy written 9 weeks ago by jeevanbio70 • updated 9 weeks ago by Jennifer Hillman Jackson21k
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89
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GATK and c. elegans
gatk dbsnp c elegans written 9 weeks ago by peadams0 • updated 9 weeks ago by Jennifer Hillman Jackson21k
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1
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94
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GATK tools and reference genomes
gatk written 3 months ago by anamabrantesc0 • updated 3 months ago by Jennifer Hillman Jackson21k
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136
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Realign_Target_Creator error running
gatk galaxy realign_target_creator written 3 months ago by abedkurdi100 • updated 3 months ago by Jennifer Hillman Jackson21k
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132
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5 follow
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GATK Select Variants Reference Genome
custom gatk genome select variants build written 4 months ago by peve0 • updated 4 months ago by Jennifer Hillman Jackson21k
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1
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139
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1
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0
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3
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GATK indel realigner using custom reference
indel realigner custom reference gatk written 2.6 years ago by laura0 • updated 7 months ago by vignes.gangboard0
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219
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SelectVariants and JEXL
gatk jexl selectvariants written 9 months ago by petersam0 • updated 9 months ago by Jennifer Hillman Jackson21k
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1
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205
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1
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0
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2
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280
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Count Covariates GATK error
gatk snp written 11 months ago by up6522140
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GATK pipeline for WGS samples
gatk illumina wgs written 11 months ago by bsmith0304650 • updated 11 months ago by Jennifer Hillman Jackson21k
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642
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6 follow
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GATK 3 wrapper
gatk written 22 months ago by christophe.habib330
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1
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573
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1
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GATK pipeline / Mutect
gatk mutect written 15 months ago by Bogdan Tanasa20 • updated 15 months ago by Jennifer Hillman Jackson21k
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1
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3
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4
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515
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4
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contig order b37
gatk alignment bwa written 17 months ago by jane190 • updated 17 months ago by Jennifer Hillman Jackson21k
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Realigner Target Creator in GATKtools
realigner realigner target creator gatk gatktools written 2.4 years ago by mltlbrt10 • updated 17 months ago by marcosp0
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451
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1
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3
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Mark Duplicate Reads Error- "Value was put into PairInfoMap more than once"
gatk bwa-mem written 18 months ago by JP20 • updated 18 months ago by Jennifer Hillman Jackson21k
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1
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434
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Problem with installation GATK
missing tool dependencies package picard gatk written 18 months ago by Noè0 • updated 18 months ago by Jennifer Hillman Jackson21k
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1
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373
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galaxy doesn't recognise dbSNP file I uploaded
gatk written 19 months ago by henryrobins30 • updated 18 months ago by Jennifer Hillman Jackson21k
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1
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427
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1
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Import .fasta dataset to NGS: GATK
gatk fasta written 20 months ago by regina.casanova.900 • updated 20 months ago by Jennifer Hillman Jackson21k
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Problem with Refreence Genome in Gatk Tools
referncegenome gatk galaxy gatktools written 2.5 years ago by mltlbrt10 • updated 20 months ago by regina.casanova.900
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440
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GATK2 tools installation
local galaxy gatk written 21 months ago by Marc30
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427
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2
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0
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1
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558
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GATK Haplotype Caller
gatk galaxy written 23 months ago by ecekartal890 • updated 23 months ago by Jennifer Hillman Jackson21k
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0
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How to use GATK on Galaxy
gatk help written 2.0 years ago by hachemi.zeraia0 • updated 2.0 years ago by Guy Reeves710
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Problem with RealignerTargetCreator in the CloudMap workflow
cloudmap gatk realignertargetcreator written 2.2 years ago by jope130710 • updated 2.2 years ago by Daniel Blankenberg ♦♦ 1.6k
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