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FastQ detects full drive on Docker machine with volumes mounted directly in Windows
docker galaxy conda fastq written 2.0 years ago by alexandrurepede • 20
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3
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640
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5 follow
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Private vs Public Galaxy: different outcomes following Fastq upload
galaxy upload fastq written 7 months ago by lhp_sf4dem • 30
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1
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832
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1
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Upload fastq to 'Data Libraries' Using Bioblend Python library
python galaxy fastq written 2.3 years ago by amey.damle • 30 • updated 2.3 years ago by Hotz, Hans-Rudolf • 1.8k
4
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1
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681
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1
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Upload of fastq files in the workflow
fastqsanger input datatype tool fastq written 2.1 years ago by andrea.annibal • 20 • updated 2.1 years ago by Jennifer Hillman Jackson ♦ 25k
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596
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Local Galaxy. Trimmomatic does not see fastq files.
trimming fastq quality trimmer fastq rna-seq written 13 months ago by hamza_karakurt • 10 • updated 12 months ago by zachary.gaber • 80
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Problems with the Upload function at https://usegalaxy.org -- Workaround included, follow for updates
galaxy usegalaxy.org upload fastq written 5 months ago by Ath.T • 20 • updated 5 months ago by Jennifer Hillman Jackson ♦ 25k
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Need help with "FASTQ to FASTA" tool
inputs fasta format upload fastq written 4.2 years ago by qinyuan564 • 0 • updated 4.2 years ago by Jennifer Hillman Jackson ♦ 25k
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3
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How to convert SRA Files to FASTAQ files in a 32 BIt windows computer ( beginner here)
galaxy sra fastq written 3.7 years ago by rahulraghavantv • 0
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2
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Difference between Fastq and Fastqsanger?
fastqsanger datatype format tools fastq written 3.5 years ago by krishnakarthik.vemuri • 10 • updated 3.5 years ago by Jennifer Hillman Jackson ♦ 25k
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1
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890
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1
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Illumina DNA sequence upload problem
ftp upload fastq written 3.0 years ago by lnaren • 10 • updated 3.0 years ago by Jennifer Hillman Jackson ♦ 25k
2
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1
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2.0k
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1
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fatal error exit code 1 from Trimmomatic when input fastq data has an incorrect datatype assignment
fastqsanger datatype fastqsanger.gz upload fastq written 2.5 years ago by chrisscotland • 10 • updated 2.5 years ago by Jennifer Hillman Jackson ♦ 25k
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2
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Error while Using 'run-workflow'
dataset galaxy workflow fastq written 2.3 years ago by amey.damle • 30
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2
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679
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2
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FASTAQ not able to be selected in BWA, though FastaQC passed
fastqc bwa workflow fastq written 22 months ago by bon1068 • 30 • updated 22 months ago by chen.randy • 110
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3
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1.1k
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3
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fastq.gz data - help for changes that impact upload (any source), history contents, and tool usage
fastq.gz fastqsanger datatype fastqsanger.gz fastq written 21 months ago by mvinas • 20
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0
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401
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How to program Galaxy pipeline to execute it on the new SRA identifier or on the uploaded FASTQ pair every new run?
stack pipeline sra fastq written 18 months ago by msprindzhuk • 50
2
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1
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382
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1
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How to align 500 fastq unpaired files to an uploaded reference and put every single result to a new folder?
alignment mapping batch fastq written 17 months ago by msprindzhuk • 50 • updated 17 months ago by Guy Reeves • 1.0k
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1
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533
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1
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Error due to format of uploaded fastq data
format fastq groomer upload error written 17 months ago by o.haidar • 10 • updated 17 months ago by Jennifer Hillman Jackson ♦ 25k
1
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2
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460
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2
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Tool does not recognise dataset as input
fastqsanger dataset datatype tool fastq written 13 months ago by EHC • 10
2
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1
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227
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1
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what is AB SOLiD System 2.0 in sequencing ?
rna-seq illumina fastq solid written 7 weeks ago by Mo • 40 • updated 6 weeks ago by Jennifer Hillman Jackson ♦ 25k
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0
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54
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0
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NCBI SRA Tool Importer can't import a list
sra fastq written 20 days ago by ewilli28 • 40
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1
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1.3k
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1
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Cannot select data sets in local galaxy sever
trimmomatic galaxy fastq written 4.4 years ago by satshil.r • 0 • updated 4.4 years ago by Bjoern Gruening ♦ 5.1k
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2
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1.8k
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FASTQ files in history but cannot add to tasks like FASTQ trimmer or TopHat2
rna-seq galaxy tophat fastq written 4.4 years ago by james.lloyd • 0
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1
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1
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combining indexed paired reads from two lanes of a Hiseq rapidrun
fastq sequence paired-end manipulation written 4.3 years ago by mduffy • 0 • updated 4.3 years ago by Jennifer Hillman Jackson ♦ 25k
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1
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1
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bowtie aligner does not see my fastq file?
bowtie rna-seq format metadata fastq written 4.2 years ago by meltemelitas • 10 • updated 4.2 years ago by Jennifer Hillman Jackson ♦ 25k
2
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1
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1.0k
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1
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Need help with "Bowtie2" tool
bowtie2 rna-seq metadata datatype fastq written 4.2 years ago by meltemelitas • 10 • updated 4.2 years ago by Jennifer Hillman Jackson ♦ 25k
5
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1
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1.3k
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1
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fastq data types
tools galaxy formatting datatype fastq written 4.1 years ago by tomaz • 10 • updated 4.1 years ago by Jennifer Hillman Jackson ♦ 25k
1
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1
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1
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Need help with "FASTQ Quality Trimmer" tool
fastq-quality-trimmer dataprep inputs fastq written 3.9 years ago by derekseidel • 0 • updated 3.9 years ago by Jennifer Hillman Jackson ♦ 25k
0
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2
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1.3k
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2
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joining two fastq files
datasets textmanipulation concatenate fastq written 3.9 years ago by tali.mandel • 10
3
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1
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1.4k
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1
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How do I down sample a fastq in Galaxy?
fastq written 3.7 years ago by mike.thon • 30 • updated 3.7 years ago by Bjoern Gruening ♦ 5.1k
0
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1
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890
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1
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Uploads don't work properly
gz fastq ftp upload main written 3.6 years ago by Tommy • 0 • updated 3.6 years ago by Jennifer Hillman Jackson ♦ 25k
1
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1
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1.3k
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1
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How to filter FASTQ by QS & length using galaxy tools in the command line?
filtering galaxy fastq qs commandline written 3.6 years ago by hlyates • 0 • updated 3.6 years ago by Bjoern Gruening ♦ 5.1k
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2
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2
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FASTQ Joiner or Interlacer problem
interlacer joiner galaxy pair end fastq written 3.5 years ago by elin • 0
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1
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1.0k
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1
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Clip Adapter Sequence
trimmomatic fastqsanger datatype clip fastq written 3.3 years ago by sean.li • 0 • updated 3.3 years ago by Jennifer Hillman Jackson ♦ 25k
1
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1
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725
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1
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FASTQ groomer - problem with dataset?
groomer fastq written 3.1 years ago by ltosti88 • 0 • updated 3.1 years ago by Jennifer Hillman Jackson ♦ 25k
3
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2
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2.3k
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GWAS: Fastq to BAM to VCF
bam fastq vcf variant gwas written 2.6 years ago by nvlinh.dth • 10 • updated 2.6 years ago by Jennifer Hillman Jackson ♦ 25k
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