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2
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691
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6 follow
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FastQ detects full drive on Docker machine with volumes mounted directly in Windows
docker galaxy conda fastq written 18 months ago by alexandrurepede • 20
5
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3
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153
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5 follow
3
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Private vs Public Galaxy: different outcomes following Fastq upload
galaxy upload fastq written 28 days ago by lhp_sf4dem • 30
3
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1
answer
559
views
1
answer
Upload fastq to 'Data Libraries' Using Bioblend Python library
python galaxy fastq written 21 months ago by amey.damle • 30 • updated 21 months ago by Hotz, Hans-Rudolf • 1.7k
4
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1
answer
505
views
1
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Upload of fastq files in the workflow
fastqsanger input datatype tool fastq written 19 months ago by andrea.annibal • 20 • updated 19 months ago by Jennifer Hillman Jackson ♦ 24k
1
vote
1
answer
293
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1
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Local Galaxy. Trimmomatic does not see fastq files.
trimming fastq quality trimmer fastq rna-seq written 6 months ago by hamza_karakurt • 10 • updated 6 months ago by zachary.gaber • 80
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1
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1.2k
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1
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Need help with "FASTQ to FASTA" tool
inputs fasta format upload fastq written 3.6 years ago by qinyuan564 • 0 • updated 3.6 years ago by Jennifer Hillman Jackson ♦ 24k
2
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3
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2.2k
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3
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How to convert SRA Files to FASTAQ files in a 32 BIt windows computer ( beginner here)
galaxy sra fastq written 3.1 years ago by rahulraghavantv • 0
2
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2
answers
6.1k
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2
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Difference between Fastq and Fastqsanger?
fastqsanger datatype format tools fastq written 2.9 years ago by krishnakarthik.vemuri • 10 • updated 2.9 years ago by Jennifer Hillman Jackson ♦ 24k
4
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1
answer
749
views
1
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Illumina DNA sequence upload problem
ftp upload fastq written 2.4 years ago by lnaren • 0 • updated 2.4 years ago by Jennifer Hillman Jackson ♦ 24k
1
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2
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547
views
2
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Error while Using 'run-workflow'
dataset galaxy workflow fastq written 21 months ago by amey.damle • 30
5
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2
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450
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2
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FASTAQ not able to be selected in BWA, though FastaQC passed
fastqc bwa workflow fastq written 16 months ago by bon1068 • 30 • updated 16 months ago by chen.randy • 110
3
votes
3
answers
705
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3
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fastq.gz data - help for changes that impact upload (any source), history contents, and tool usage
fastq.gz fastqsanger datatype fastqsanger.gz fastq written 14 months ago by mvinas • 20
1
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0
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265
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0
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How to program Galaxy pipeline to execute it on the new SRA identifier or on the uploaded FASTQ pair every new run?
stack pipeline sra fastq written 12 months ago by msprindzhuk • 40
2
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1
answer
242
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1
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How to align 500 fastq unpaired files to an uploaded reference and put every single result to a new folder?
alignment mapping batch fastq written 11 months ago by msprindzhuk • 40 • updated 11 months ago by Guy Reeves • 1.0k
1
vote
1
answer
303
views
1
answer
Error due to format of uploaded fastq data
format fastq groomer upload error written 10 months ago by o.haidar • 10 • updated 10 months ago by Jennifer Hillman Jackson ♦ 24k
1
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2
answers
247
views
2
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Tool does not recognise dataset as input
fastqsanger dataset datatype tool fastq written 6 months ago by EHC • 10
0
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1
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1.1k
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1
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Cannot select data sets in local galaxy sever
trimmomatic galaxy fastq written 3.8 years ago by satshil.r • 0 • updated 3.8 years ago by Bjoern Gruening ♦ 5.0k
0
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2
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1.6k
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2
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FASTQ files in history but cannot add to tasks like FASTQ trimmer or TopHat2
rna-seq galaxy tophat fastq written 3.8 years ago by james.lloyd • 0
0
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1
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1.7k
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1
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combining indexed paired reads from two lanes of a Hiseq rapidrun
fastq sequence paired-end manipulation written 3.8 years ago by mduffy • 0 • updated 3.8 years ago by Jennifer Hillman Jackson ♦ 24k
1
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1
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1.1k
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1
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bowtie aligner does not see my fastq file?
bowtie rna-seq format metadata fastq written 3.7 years ago by meltemelitas • 10 • updated 3.7 years ago by Jennifer Hillman Jackson ♦ 24k
2
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1
answer
855
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1
answer
Need help with "Bowtie2" tool
bowtie2 rna-seq metadata datatype fastq written 3.7 years ago by meltemelitas • 10 • updated 3.7 years ago by Jennifer Hillman Jackson ♦ 24k
5
votes
1
answer
1.1k
views
1
answer
fastq data types
tools galaxy formatting datatype fastq written 3.6 years ago by tomaz • 10 • updated 3.6 years ago by Jennifer Hillman Jackson ♦ 24k
1
vote
1
answer
1.1k
views
1
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Need help with "FASTQ Quality Trimmer" tool
fastq-quality-trimmer dataprep inputs fastq written 3.4 years ago by derekseidel • 0 • updated 3.4 years ago by Jennifer Hillman Jackson ♦ 24k
0
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2
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1.0k
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2
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joining two fastq files
datasets textmanipulation concatenate fastq written 3.4 years ago by tali.mandel • 10
3
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1
answer
1.2k
views
1
answer
How do I down sample a fastq in Galaxy?
fastq written 3.2 years ago by mike.thon • 30 • updated 3.2 years ago by Bjoern Gruening ♦ 5.0k
0
votes
1
answer
736
views
1
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Uploads don't work properly
gz fastq ftp upload main written 3.1 years ago by Tommy • 0 • updated 3.1 years ago by Jennifer Hillman Jackson ♦ 24k
1
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1
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1.1k
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1
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How to filter FASTQ by QS & length using galaxy tools in the command line?
filtering galaxy fastq qs commandline written 3.1 years ago by hlyates • 0 • updated 3.1 years ago by Bjoern Gruening ♦ 5.0k
1
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2
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955
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2
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FASTQ Joiner or Interlacer problem
interlacer joiner galaxy pair end fastq written 3.0 years ago by elin • 0
1
vote
1
answer
886
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1
answer
Clip Adapter Sequence
trimmomatic fastqsanger datatype clip fastq written 2.8 years ago by sean.li • 0 • updated 2.8 years ago by Jennifer Hillman Jackson ♦ 24k
1
vote
1
answer
555
views
1
answer
FASTQ groomer - problem with dataset?
groomer fastq written 2.6 years ago by ltosti88 • 0 • updated 2.6 years ago by Jennifer Hillman Jackson ♦ 24k
3
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2
answers
1.7k
views
2
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GWAS: Fastq to BAM to VCF
bam fastq vcf variant gwas written 2.1 years ago by nvlinh.dth • 10 • updated 2.1 years ago by Jennifer Hillman Jackson ♦ 24k
1
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4
answers
530
views
4
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GROOMER ON NEXTSEQ500 DATA
rna-seq illumina groomer fastq written 21 months ago by juliaquingo • 0
0
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1
answer
868
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1
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Adapter and quality trimming using Trim Galore integrated Galaxy
trimming paired galaxy trim galore fastq written 21 months ago by evensky.maria • 0 • updated 21 months ago by Jennifer Hillman Jackson ♦ 24k
1
vote
1
answer
719
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1
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illumina PE quality control - NGS: QC & Manipulation
quality fastqc fastq paired-end wgs written 19 months ago by sumudu_rangika • 0 • updated 19 months ago by Jennifer Hillman Jackson ♦ 24k
0
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1
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443
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1
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Galaxy files biger than 2GB
galaxy ftp upload fastq written 19 months ago by maciej.smialas • 0 • updated 19 months ago by Jennifer Hillman Jackson ♦ 24k
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