elixir Posts

C: how prepare File containing a mapping of transcripts to genes under Salmon by Leila Kian • 10
each sequence identifier of transcriptome file is like this: >ENSMUST00000193812.1|ENSMUSG000...
A: Galaxy differential expression starting from raw FASTQ files by Jennifer Hillman Jackson ♦ 25k
Hello, The DE workflow here is for RNA-seq data. https://galaxyproject.org/learn/ - *RNA-seq: ...
A: Jobs at Galaxy Main https://usegalaxy.org remain in executing (yellow) state for by Martin Čech ♦♦ 4.9k
This should be remedied and all the jobs should run/finish as expected. Thanks for reporting.
C: Workflows don't execute after successfully being invoked at https://usegalaxy.or by Jennifer Hillman Jackson ♦ 25k
Thanks again and please follow the updates here: https://biostar.usegalaxy.org/p/28818/#29695
A: How to get data into the Galaxy integrated Jupyter R kernel? by Martin Čech ♦♦ 4.9k
there should be a `put` and a `get` commandline tools that emulate the python `put()` `get()` fun...
C: Workflows don't execute after successfully being invoked at https://usegalaxy.or by Jennifer Hillman Jackson ♦ 25k
**Update 10-15-2018 10:40 am PST** The datasets produced by the workflow will eventually show up...
A: Workflows don't execute after successfully being invoked at https://usegalaxy.or by irelka.colina • 20
Thank you very much for your answer. Today, I tried several times but the problem is still there....
C: how prepare File containing a mapping of transcripts to genes under Salmon by Leila Kian • 10
Excuse me one more question if I wanted to download these two columns separately on UCSC table br...
C: how prepare File containing a mapping of transcripts to genes under Salmon by Leila Kian • 10
Hello, thank you very much. I meant when I want to to get table include transcript_id and gene_...
A: USING DAVID Via GALAXY by taniamahmood38 • 0
yess exactly i am having the same problem now
A: DESeq2 gives fold changes for transcripts with zero counts in all samples by m.bernt • 20
that's a great idea. dominique: could you upload the transcripts / count table and start deseq2 o...
A: Bowtie2/Samtools files are not visualized with Trackster: Fatal error Exit code by Jennifer Hillman Jackson ♦ 25k
Hello, Check to see if the database is assigned for these datasets. My guess is that it is not a...