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7
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1
answer
5.1k
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5 follow
1
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De novo transcriptome assembly and reference guided transcriptome assembly
rna-seq cufflinks tophat assembly written 4.3 years ago by edoade_2014 • 30 • updated 4.3 years ago by Jennifer Hillman Jackson ♦ 25k
3
votes
0
answers
1.3k
views
0
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News: RNA-Seq and Chip-Seq Workshop in December!
chip-seq news cufflinks tophat rna-seq written 4.0 years ago by mtbritton • 30
4
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5
answers
1.8k
views
5
answers
Locally cached sequence not detected from DBkey in cuffmerge when using mm10
cuffdiff dbkey cufflinks cuffmerge written 3.4 years ago by max.shafer • 30 • updated 3.3 years ago by cookseq2 • 0
2
votes
1
answer
4.5k
views
1
answer
Cuffcompare Or Cuffmerge
cufflinks cuffmerge rna-seq written 6.5 years ago by 杨继文 • 210 • updated 6.5 years ago by ericliaowei@gmail.com • 70
10
votes
4
answers
1.7k
views
7 follow
4
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cufflinks-job submission failed
galaxy cufflinks rna-seq written 3.6 years ago by raj_262920 • 20 • updated 3.6 years ago by carlos • 30
2
votes
1
answer
3.2k
views
6 follow
1
answer
Cuffdiff gene ID
galaxy cufflinks gff written 3.5 years ago by Fang,Xiefan • 30 • updated 3.5 years ago by Jennifer Hillman Jackson ♦ 25k
2
votes
2
answers
2.4k
views
2
answers
Cufflinks Reference Annotation
cufflinks rna-seq written 6.3 years ago by Irene Bassano • 90 • updated 6.2 years ago by Jennifer Hillman Jackson ♦ 25k
4
votes
1
answer
2.3k
views
1
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Cufflinks assembled transcripts (format gtf) returns "empty" file; why?
cufflinks gtf rna-seq written 4.3 years ago by mmccra4 • 10 • updated 4.3 years ago by Jennifer Hillman Jackson ♦ 25k
1
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1
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1.4k
views
1
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Cufflinks error when trying to align against genome
cufflinks rna-seq error assembly written 4.2 years ago by bwb012 • 20 • updated 4.2 years ago by Jennifer Hillman Jackson ♦ 25k
3
votes
4
answers
2.9k
views
4
answers
Gene_short_name missing in CuffDiff output files
cuffdiff cufflinks gene_name rna-seq written 4.2 years ago by m.maleszewska • 20 • updated 4.2 years ago by Jennifer Hillman Jackson ♦ 25k
1
vote
2
answers
4.9k
views
2
answers
Cufflinks output file with many 0 FPKM values
cufflinks zebrafish rna-seq written 4.1 years ago by puneetd • 10
1
vote
2
answers
1.8k
views
2
answers
BAM file not working with Cufflinks or IGV
bam galaxy cufflinks rna-seq written 4.0 years ago by dluesse • 10
4
votes
1
answer
879
views
5 follow
1
answer
Need help with "Cufflinks" tool
cufflinks written 3.8 years ago by joyraj_07 • 10 • updated 3.8 years ago by Bjoern Gruening ♦ 5.1k
7
votes
2
answers
967
views
2
answers
Need help with "Cufflinks" tool
cufflinks written 3.8 years ago by joyraj_07 • 10 • updated 3.7 years ago by Martin Čech ♦♦ 4.9k
1
vote
1
answer
1.1k
views
1
answer
Error in CuffDiff
cuffdiff micrornaseq cufflinks gff3 mirbase written 3.4 years ago by gkuffel22 • 170 • updated 3.3 years ago by Jennifer Hillman Jackson ♦ 25k
1
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0
answers
699
views
0
answers
cuffmerge does not recognize gtf's
cufflinks written 3.3 years ago by dandrew • 10
8
votes
3
answers
1.3k
views
3
answers
Usegalaxy main server down? (Queue not working) - PROBLEM FIXED
server cufflinks usegalaxy rna-seq written 2.5 years ago by yena.oh • 70
3
votes
1
answer
1.1k
views
1
answer
Local Galaxy instance: GTF file from Data Library has 1 line of data and multiple comments of data "Missing metadata"
galaxy rna-seq cufflinks data library gtf file written 2.5 years ago by isaac.raplee • 10
3
votes
1
answer
1.3k
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1
answer
Stranded vs unstranded cufflinks
rna-seq cufflinks strand nexteraxt written 2.4 years ago by VY • 120 • updated 2.2 years ago by Jennifer Hillman Jackson ♦ 25k
3
votes
1
answer
797
views
1
answer
Tool error "Remote job server indicated a problem running or monitoring this job"
cufflinks usegalaxy.org job tool error written 2.1 years ago by lkmills • 10 • updated 2.1 years ago by Jennifer Hillman Jackson ♦ 25k
3
votes
1
answer
599
views
1
answer
Long wait times
cufflinks help written 17 months ago by luka.kremic • 20 • updated 17 months ago by Jennifer Hillman Jackson ♦ 25k
3
votes
2
answers
395
views
2
answers
Waiting for Cufflinks to run
cufflinks galaxy written 17 months ago by rishamchaudry • 20
1
vote
1
answer
426
views
1
answer
Cufflinks not working from last 4-5 days
bam galaxy cufflinks rna-seq written 17 months ago by singhak2 • 10 • updated 17 months ago by Jennifer Hillman Jackson ♦ 25k
1
vote
1
answer
2.2k
views
1
answer
Tophat vs HISAT
cufflinks tophat rna-seq written 16 months ago by Beatriz Ramos • 10 • updated 16 months ago by Jennifer Hillman Jackson ♦ 25k
1
vote
1
answer
217
views
1
answer
Job not starting at Galaxy Main https://usegalaxy.org
cuffdiff cufflinks usegalaxy.org job queue written 6 months ago by op263 • 50 • updated 6 months ago by Jennifer Hillman Jackson ♦ 25k
2
votes
1
answer
181
views
1
answer
Empty data result from Cufflinks
hisat2 custom cufflinks gtf genome written 6 months ago by a.walne • 40 • updated 6 months ago by Jennifer Hillman Jackson ♦ 25k
2
votes
1
answer
300
views
1
answer
cummerbund tool error
workflows galaxy cufflinks rna-seq written 5 months ago by eculfa • 10 • updated 5 months ago by Jennifer Hillman Jackson ♦ 25k
1
vote
1
answer
174
views
1
answer
Cufflinks dependency problem error - Solution: use version 2.2.1.2 or later
galaxy cufflinks rna-seq written 12 weeks ago by garentguuu • 10 • updated 12 weeks ago by Jennifer Hillman Jackson ♦ 25k
0
votes
2
answers
687
views
2
answers
Tophat To Ngs Toolbox
cufflinks rna-seq written 9.0 years ago by Rathi Thiagarajan • 50 • updated 9.0 years ago by Matthias Dodt • 110
0
votes
1
answer
627
views
1
answer
Tophat And Cufflinks
cufflinks rna-seq written 8.4 years ago by Nguyen, Doan • 20 • updated 8.4 years ago by Jeremy Goecks • 2.2k
0
votes
3
answers
1.1k
views
3
answers
Re: [Galaxy-Bugs] Galaxy Tool Error Report From Azovoil@Gwdg.De
bam samtools cufflinks rna-seq written 8.3 years ago by Jeremy Goecks • 2.2k • updated 7.7 years ago by Ross Lazarus • 30
1
vote
2
answers
761
views
2
answers
Tophat Etc
rna-seq cufflinks gff written 8.0 years ago by David Matthews • 630 • updated 8.0 years ago by Jeremy Goecks • 2.2k
0
votes
0
answers
1.3k
views
0
answers
November 24, 2010 Galaxy Development News Brief
rna-seq bowtie alignment bwa cufflinks gff written 7.9 years ago by Jennifer Hillman Jackson ♦ 25k
0
votes
1
answer
2.1k
views
1
answer
P_Ids And Cufflinks
cufflinks rna-seq written 7.9 years ago by David Matthews • 630 • updated 7.9 years ago by Jeremy Goecks • 2.2k
0
votes
0
answers
573
views
0
answers
Fwd: P_Ids And Cufflinks
cufflinks rna-seq written 7.9 years ago by David Matthews • 630
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