Showing: chip-seqreset
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How to do differential peak analysis after scaling bam files?
chip-seq written 4 weeks ago by xiaoyonf0 • updated 4 weeks ago by Mo Heydarian820
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Problem with the tool: Extract Genomic DNA
chip-seq galaxy extract written 12 weeks ago by mariane.cfugulin20 • updated 7 weeks ago by Jennifer Hillman Jackson25k
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Problem with BEDTOBAM tool in Galaxy
chip-seq bedtools galaxy written 8 weeks ago by abhirup19920 • updated 7 weeks ago by Jennifer Hillman Jackson25k
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error in bowtie 2 mapping
chip-seq exit code 1 bowtie mapping written 10 weeks ago by ars19892210 • updated 10 weeks ago by Martin Čech ♦♦ 4.8k
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109
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ChIPseq vs RNAseq comparison
chip-seq rna-seq written 11 weeks ago by VY120 • updated 11 weeks ago by Bjoern Gruening5.1k
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9 follow
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Galaxy failed to unzip gz files after uploading
chip-seq gz galaxy unzip written 20 months ago by jamwest10120 • updated 12 weeks ago by maisarahabsamad0
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109
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Irreproducible discovery rate (IDR)
chip-seq written 12 weeks ago by lnaren10
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141
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ChIP-seq mapping with Bowtie for Illumina 1.1.2
chip-seq bowtie2 bowtie written 3 months ago by saswati.das0 • updated 3 months ago by Jennifer Hillman Jackson25k
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SICER and mm10
chip-seq galaxy mm10 sicer mm9 written 3 months ago by giorgia.rizzari0 • updated 3 months ago by Jennifer Hillman Jackson25k
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156
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Differentiate data between two heatmap data sets
chip-seq heatmap differentiate written 3 months ago by lnaren10 • updated 3 months ago by Jennifer Hillman Jackson25k
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148
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Find a Gene List
chip-seq gene galaxy snp coordinate written 3 months ago by siyavash_damdar0 • updated 3 months ago by Jennifer Hillman Jackson25k
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240
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216
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Choosing relevant MACS2 peaks
chip-seq written 4 months ago by jenyka_dm10
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178
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multi bam summary
chip-seq bam error sort samtools written 4 months ago by lnaren10 • updated 4 months ago by Jennifer Hillman Jackson25k
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205
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Output Files of MACS2 bdgdiff
chip-seq macs2 bed bedgraph written 4 months ago by hamza_karakurt10 • updated 4 months ago by Jennifer Hillman Jackson25k
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217
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Bowtie mapping result
chip-seq bam sam bowtie filter written 4 months ago by lnaren10
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164
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Extracting Gene Names from BigWig File
chip-seq bigwig deeptools written 4 months ago by hamza_karakurt10 • updated 4 months ago by Devon Ryan1.9k
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244
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An odd number of differential peaks in MACS2
chip-seq macs2 bdgdiff written 4 months ago by nehoralevi0 • updated 4 months ago by Jennifer Hillman Jackson25k
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332
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ChIP seq Motif analysis
chip-seq macs2 meme motif written 4 months ago by sonam.rani10 • updated 4 months ago by Jennifer Hillman Jackson25k
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Jobs are not running
chip-seq bam written 5 months ago by liuc0 • updated 5 months ago by jb_julla0
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271
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Sequence Duplication level
chip-seq read duplication fastqc written 5 months ago by sonam.rani10 • updated 5 months ago by Jennifer Hillman Jackson25k
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145
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Diffbind and repmatch fatal error
chip-seq diffbind written 6 months ago by jenyka_dm10 • updated 6 months ago by Jennifer Hillman Jackson25k
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453
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1
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164
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MACS output files
chip-seq macs macs2 usage learn written 6 months ago by jenyka_dm10 • updated 6 months ago by Jennifer Hillman Jackson25k
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267
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calling peaks without control
chip-seq written 6 months ago by jenyka_dm10 • updated 6 months ago by Jennifer Hillman Jackson25k
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Phastcons score under hi-seq peaks
chip-seq phastcons annotation ucsc written 6 months ago by mdp07vm20 • updated 6 months ago by Jennifer Hillman Jackson25k
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