Showing: bowtiereset
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Bowtie on Galaxy - -v or -n ?
galaxy bowtie written 21 days ago by erica.mica0 • updated 20 days ago by Jennifer Hillman Jackson21k
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51
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Bowtie indexing error (local Galaxy)
index bowtie written 4 weeks ago by vebaev120
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How can I see the amount of reads and aligned reads from Bowtie?
bowtie written 6 weeks ago by dchalagarcia0 • updated 6 weeks ago by Bao Ho50
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use bowtie for illumina with phred33?
bowtie alignment rna-seq written 9 weeks ago by valdirbarth0 • updated 9 weeks ago by Jennifer Hillman Jackson21k
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Bowtie 2 error
line-command bowtie written 9 weeks ago by shambyross10 • updated 9 weeks ago by Jennifer Hillman Jackson21k
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104
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Bowtie Data Manager not working (local galaxy)
data manager bowtie written 12 weeks ago by vebaev120 • updated 9 weeks ago by Jennifer Hillman Jackson21k
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Bowtie option --al, write reads to fastq file?
bowtie written 11 weeks ago by vebaev120 • updated 10 weeks ago by Jennifer Hillman Jackson21k
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92
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Can't do sam to bam conversion
samtools bowtie snp written 3 months ago by tanvee0 • updated 3 months ago by Jennifer Hillman Jackson21k
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Dataset generation errors while running Bowtie these days
bowtie written 4 months ago by apengood20 • updated 3 months ago by Jennifer Hillman Jackson21k
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Reference genome on Bowtie2
bowtie local genome data-managers indexes written 5 months ago by gomez.andreia0 • updated 5 months ago by Jennifer Hillman Jackson21k
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Integrating Pre-built Bowtie2 Indexes
bowtie2 galaxy bowtie rna-seq written 6 months ago by onspotproductions30 • updated 6 months ago by Devon Ryan1.3k
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270
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Multiple fastq files in Bowtie2
bam galaxy bowtie written 7 months ago by balaszone60 • updated 7 months ago by Martin Čech ♦♦ 3.7k
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How to count unique short sequences in FASTQ
galaxy bowtie written 7 months ago by yjoechen0 • updated 7 months ago by Devon Ryan1.3k
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Re: Reference Genome
bowtie written 8 months ago by tirupathiraobt10
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5 follow
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Filter Bowtie 2 alignement
samtools bowtie alignment written 8 months ago by Mic70 • updated 8 months ago by Devon Ryan1.3k
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Problem with running tophat2
rnaseq bowtie tophat rna-seq written 9 months ago by Genosis20 • updated 9 months ago by Jennifer Hillman Jackson21k
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Reference Genomes do not exist in local Galaxy's Bowtie2
bowtie written 11 months ago by david.sims80 • updated 11 months ago by chaoyuan60
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HELP WITH PROJECT!!!!
cufflinks bowtie tophat rna-seq written 11 months ago by gabriela.nine0 • updated 11 months ago by pinakin760
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Mapped paired-end reads with Bowtie2
chip-seq bowtie written 11 months ago by morgan.thenoz0 • updated 11 months ago by Jennifer Hillman Jackson21k
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How long does mapping with bowtie in ChIP-Seq take?
chip-seq long run time long time bowtie written 11 months ago by aharbison0 • updated 11 months ago by Martin Čech ♦♦ 3.7k
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270
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Problem with custom reference genome
index bowtie written 14 months ago by Philipp.rathert30 • updated 12 months ago by Jennifer Hillman Jackson21k
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bam to fasta
bam bowtie written 13 months ago by oliverh0 • updated 13 months ago by Jennifer Hillman Jackson21k
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262
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Adding a new index-reference genome
bowtie written 13 months ago by din_rb0 • updated 13 months ago by Jennifer Hillman Jackson21k
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