Showing: bamreset
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Adding read group information in a bam header
bam vcf galaxy written 3.1 years ago by gkuffel22170 • updated 3.1 years ago by Jennifer Hillman Jackson25k
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bam to VCF
bam vcf bowtie written 8 months ago by xlu120 • updated 8 months ago by Jennifer Hillman Jackson25k
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Convert SAM to sorted BAM
bam samtools sam sort written 3.7 years ago by biomonika60 • updated 3.7 years ago by Jennifer Hillman Jackson25k
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IGV option doesn't appear after uploading the BAM file
bam igv written 3.2 years ago by cindy.castelao10 • updated 3.2 years ago by Martin Čech ♦♦ 4.6k
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Whole Exome Sequencing
bam written 3.2 years ago by mia.khanii10 • updated 20 months ago by marcocassone0
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BAM files after BWA MEM
bam galaxy bwa written 2.8 years ago by j.d.helix10 • updated 2.8 years ago by Bjoern Gruening5.0k
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SAMtools Merge BAM files hangs
bam samtools galaxy written 2.7 years ago by kr8110 • updated 2.7 years ago by Jennifer Hillman Jackson25k
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Faulty BAM/SAM files after Bowtie2, filtering and sorting
bam samtools galaxy written 2.4 years ago by nash.claire10 • updated 2.4 years ago by Jennifer Hillman Jackson25k
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GWAS: Fastq to BAM to VCF
bam fastq vcf variant gwas written 2.2 years ago by nvlinh.dth10 • updated 2.2 years ago by Jennifer Hillman Jackson25k
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How to create GFF file for HT seq
bam rna-seq written 21 months ago by shraddha.adamane10 • updated 4 months ago by Joey Zou0
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Unable to download bam index file
bam tophat rna-seq written 17 months ago by cynthiak1410 • updated 16 months ago by Jennifer Hillman Jackson25k
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BED to BAM tool error
bam bedtools written 15 months ago by jm.keith60
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BAM files fail to be recognized
bam galaxy written 12 months ago by deepti1rao10 • updated 12 months ago by y.hoogstrate460
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Cufflinks not working from last 4-5 days
bam galaxy cufflinks rna-seq written 12 months ago by singhak210 • updated 12 months ago by Jennifer Hillman Jackson25k
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Cannot download a bam dataset list
collection dataset usegalaxy.org download bam written 12 weeks ago by spairet10 • updated 11 weeks ago by Jennifer Hillman Jackson25k
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Understanding and decoding SAM or BAM flags
bam samtools flag bamcoverage sam written 10 days ago by jailyn.han10 • updated 7 days ago by Jennifer Hillman Jackson25k
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Galaxy, Ngs Data, And Samtools?
bam samtools gmod written 8.8 years ago by Dave Clements10 • updated 8.8 years ago by Anton Nekrutenko1.7k
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Pysam Egg
bam samtools written 8.3 years ago by Erick Antezana570 • updated 8.3 years ago by Davide Cittaro140
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Question About Fastq Groomer
bam samtools alignment bwa written 8.1 years ago by Yao, Jianchao10 • updated 8.1 years ago by Daniel Blankenberg ♦♦ 1.7k
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Parallelizing An Ngs Mapping Workflow
bam samtools alignment bwa written 8.0 years ago by Chris Berthiaume10 • updated 7.9 years ago by Nate Coraor3.1k
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