Showing: bamreset
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Convert SAM to sorted BAM
bam samtools sam sort written 3.3 years ago by biomonika60 • updated 3.3 years ago by Jennifer Hillman Jackson23k
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Depth Command In Sam Tools
bam samtools written 4.7 years ago by Els Willems30 • updated 4.7 years ago by Jennifer Hillman Jackson23k
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Error after upload bam file
bam galaxy written 3.5 years ago by GPS20
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What is the purpose of Cufflink and Cuffmerge?
bam galaxy cufflinks rna-seq written 2.3 years ago by k.ip10 • updated 2.3 years ago by Jennifer Hillman Jackson23k
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Tophat: Samtools not found (but dependencies are installed)
bam samtools galaxy tophat rna-seq written 3.6 years ago by daniel.heredia0 • updated 3.5 years ago by y.hoogstrate450
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Removing Low Quality Reads
bam samtools written 6.1 years ago by Getiria Onsongo40 • updated 6.1 years ago by Jennifer Hillman Jackson23k
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Cufflinks Fpkm
rna-seq bowtie alignment bam samtools cufflinks written 6.7 years ago by lishiyong50 • updated 6.7 years ago by Jeremy Goecks2.2k
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Sort Sam Or Bam
bam samtools written 6.0 years ago by Clare Sloggett120 • updated 6.0 years ago by Jennifer Hillman Jackson23k
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Combining Reads from 2 Lanes
bam samtools galaxy tophat rna-seq written 2.5 years ago by nashedm10 • updated 2.5 years ago by Philipe Moncuquet40
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3
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Unable to upload (.bam) data file to local Galaxy
bam samtools galaxy path written 2.9 years ago by jchen01580 • updated 2.9 years ago by Jennifer Hillman Jackson23k
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Snp Calling Problems
bam samtools alignment bwa written 4.2 years ago by garzetti100 • updated 4.2 years ago by Jennifer Hillman Jackson23k
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obtaining SNP/SNVs from vcf or BAM files with galaxy?
bam snvs vcf snps galaxy written 2.4 years ago by kdevitofranceschi0 • updated 2.4 years ago by Jennifer Hillman Jackson23k
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Convert BAM into bigwig for chicken
bam bigwig written 3.2 years ago by d92b410010 • updated 3.2 years ago by Jennifer Hillman Jackson23k
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Error Setting BAM Metadata
bam samtools galaxy alignment tophat written 3.3 years ago by changk160 • updated 3.3 years ago by Bjoern Gruening4.8k
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BAM files after BWA MEM
bam galaxy bwa written 2.3 years ago by j.d.helix10 • updated 2.3 years ago by Bjoern Gruening4.8k
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Tophat Error
bam samtools bowtie alignment written 6.2 years ago by zohra saci20 • updated 6.2 years ago by Jennifer Hillman Jackson23k
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Pysam Egg
bam samtools written 7.9 years ago by Erick Antezana570 • updated 7.9 years ago by Davide Cittaro140
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Genbank Submission - How To Generate Fasta (Not Fastq) Files
bam samtools written 6.5 years ago by John David Osborne160 • updated 6.5 years ago by Jennifer Hillman Jackson23k
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How to integrate and run SoftSearch tool in galaxy.
bam samtools galaxy tool rna-seq written 3.6 years ago by Shirish20 • updated 3.6 years ago by Martin Čech ♦♦ 4.2k
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fastq to bam
bam written 16 months ago by aaltaytas0 • updated 16 months ago by bryantl90
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GWAS: Fastq to BAM to VCF
bam fastq vcf variant gwas written 21 months ago by nvlinh.dth10 • updated 21 months ago by Jennifer Hillman Jackson23k
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Whole Exome Sequencing
bam written 2.8 years ago by mia.khanii10 • updated 14 months ago by marcocassone0
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