Showing: bamreset
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5
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Convert SAM to sorted BAM
bam samtools sam sort written 4.2 years ago by biomonika60 • updated 4.2 years ago by Jennifer Hillman Jackson25k
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What is the purpose of Cufflink and Cuffmerge?
bam galaxy cufflinks rna-seq written 3.2 years ago by k.ip10 • updated 3.2 years ago by Jennifer Hillman Jackson25k
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1
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Depth Command In Sam Tools
bam samtools written 5.6 years ago by Els Willems30 • updated 5.6 years ago by Jennifer Hillman Jackson25k
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Error after upload bam file
bam galaxy written 4.4 years ago by GPS20
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3
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2
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3.2k
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2
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0
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Removing Low Quality Reads
bam samtools written 7.0 years ago by Getiria Onsongo40 • updated 7.0 years ago by Jennifer Hillman Jackson25k
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Combining Reads from 2 Lanes
bam samtools galaxy tophat rna-seq written 3.4 years ago by nashedm10 • updated 3.4 years ago by Philipe Moncuquet40
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1
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Tophat: Samtools not found (but dependencies are installed)
bam samtools galaxy tophat rna-seq written 4.4 years ago by daniel.heredia0 • updated 4.4 years ago by y.hoogstrate460
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3
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3
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fastq to bam
bam written 2.2 years ago by aaltaytas0 • updated 9 months ago by fp2150
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1
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Sort Sam Or Bam
bam samtools written 6.9 years ago by Clare Sloggett120 • updated 6.9 years ago by Jennifer Hillman Jackson25k
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2.6k
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1
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0
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5
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2.5k
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5
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Cufflinks Fpkm
rna-seq bowtie alignment bam samtools cufflinks written 7.6 years ago by lishiyong50 • updated 7.6 years ago by Jeremy Goecks2.2k
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2
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11
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3
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3
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Unable to upload (.bam) data file to local Galaxy
bam samtools galaxy path written 3.8 years ago by jchen01580 • updated 3.8 years ago by Jennifer Hillman Jackson25k
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2
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2
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obtaining SNP/SNVs from vcf or BAM files with galaxy?
bam snvs vcf snps galaxy written 3.2 years ago by kdevitofranceschi0 • updated 3.2 years ago by Jennifer Hillman Jackson25k
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2
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2
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GWAS: Fastq to BAM to VCF
bam fastq vcf variant gwas written 2.6 years ago by nvlinh.dth10 • updated 2.6 years ago by Jennifer Hillman Jackson25k
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Interpreting Stats output of SAM tools
chip-seq samtools bam written 20 months ago by hpremathilake20 • updated 20 months ago by Jennifer Hillman Jackson25k
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1
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Convert BAM into bigwig for chicken
bam bigwig written 4.0 years ago by d92b410010 • updated 4.0 years ago by Jennifer Hillman Jackson25k
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2.2k
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4
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0
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1
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2.1k
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1
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Snp Calling Problems
bam samtools alignment bwa written 5.1 years ago by garzetti100 • updated 5.1 years ago by Jennifer Hillman Jackson25k
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4
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2.0k
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BAM files after BWA MEM
bam galaxy bwa written 3.2 years ago by j.d.helix10 • updated 3.2 years ago by Bjoern Gruening5.1k
2
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1
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1.9k
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1
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Error Setting BAM Metadata
bam samtools galaxy alignment tophat written 4.1 years ago by changk160 • updated 4.1 years ago by Bjoern Gruening5.1k
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1
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Extract reads from BAM file
bam reads written 22 months ago by Juan Ledesma0 • updated 22 months ago by Jennifer Hillman Jackson25k
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6
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5 follow
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How to create GFF file for HT seq
bam rna-seq written 2.2 years ago by shraddha.adamane10 • updated 9 months ago by Joey Zou0
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1.8k
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How can I share data between two galaxy users?
bam galaxy written 3.8 years ago by niveditasg0 • updated 3.8 years ago by Martin Čech ♦♦ 4.9k
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1.8k
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2
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0
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1
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Tophat Error
bam samtools bowtie alignment written 7.0 years ago by zohra saci20 • updated 7.0 years ago by Jennifer Hillman Jackson25k
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Pysam Egg
bam samtools written 8.7 years ago by Erick Antezana570 • updated 8.7 years ago by Davide Cittaro140
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