Showing: bamreset
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Can't filter unmapped reads in my BAM file
bam filter galaxy rna-seq fastq written 7 days ago by ad00fernandes0 • updated 5 days ago by Jennifer Hillman Jackson25k
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Get multimapped reads from STAR in Galaxy.
bam filter sam rna-seq fastq written 7 months ago by luisafermercadom0 • updated 9 days ago by sf.rocha0
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how to sort reads by read length
bam galaxy sam sort written 26 days ago by c.zijlstra0 • updated 26 days ago by Jennifer Hillman Jackson25k
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Uploaded files still being imported ito the history after 48h
bam galaxy written 8 weeks ago by f.laforets20 • updated 5 weeks ago by madisonivy1690
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Convert multiple FASTQ files into one BAM file
bam galaxy written 7 weeks ago by angelkyril0 • updated 7 weeks ago by Jennifer Hillman Jackson25k
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HOW TO REALIGN INDELS
bam realign indel variant galaxy written 8 weeks ago by julieta10 • updated 8 weeks ago by Jennifer Hillman Jackson25k
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88
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MPileup output file error
bam mpileup size written 8 weeks ago by sfili0 • updated 8 weeks ago by Jennifer Hillman Jackson25k
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HISAT2 Output in Galaxy vs Command Line
hisat2 bam galaxy sort coordinate written 12 weeks ago by sdbaney10 • updated 12 weeks ago by Jennifer Hillman Jackson25k
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splitting BAM file to forward and revers
bam forward reverse rna-seq written 3 months ago by Ath.T20 • updated 3 months ago by Jennifer Hillman Jackson25k
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Filtering BAM files from HISAT2
bam hisat2 alignment rna-seq written 3 months ago by dexter.myrick40 • updated 3 months ago by Jennifer Hillman Jackson25k
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Regarding reads extract from bam file
bamfile bam galaxy mapping samtools written 3 months ago by DL0 • updated 3 months ago by Jennifer Hillman Jackson25k
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Realigner target creator
bam written 4 months ago by remyaraja0
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Understanding and decoding SAM or BAM flags
bam samtools flag bamcoverage sam written 6 months ago by jailyn.han10 • updated 6 months ago by Jennifer Hillman Jackson25k
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multi bam summary
chip-seq bam error sort samtools written 6 months ago by lnaren10 • updated 6 months ago by Jennifer Hillman Jackson25k
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210
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Bam filter does not work the way I expect
bam filter rules condition written 6 months ago by anamabrantesc0 • updated 6 months ago by Jennifer Hillman Jackson25k
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Bowtie mapping result
chip-seq bam sam bowtie filter written 6 months ago by lnaren10
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281
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236
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Problem with Hisat2
bam hisat2 alignment rna-seq written 6 months ago by rptiluswatson0 • updated 6 months ago by Jennifer Hillman Jackson25k
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Compare 2 BAM files for covarage regions
bam bigwig covarage deeptools gff written 7 months ago by vebaev130 • updated 6 months ago by Jennifer Hillman Jackson25k
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203
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Variant calling with 5x coverage, human genome
bam samtools alignment snp variant written 7 months ago by Daphnis0 • updated 7 months ago by Jennifer Hillman Jackson25k
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Filter BAM file by size
bam filter samtools picard written 7 months ago by aparicio24570 • updated 7 months ago by Jennifer Hillman Jackson25k
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