Showing: bamreset
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Understanding and decoding SAM or BAM flags
bam samtools flag bamcoverage sam written 12 days ago by jailyn.han10 • updated 9 days ago by Jennifer Hillman Jackson25k
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multi bam summary
chip-seq bam error sort samtools written 15 days ago by lnaren10 • updated 15 days ago by Jennifer Hillman Jackson25k
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Bam filter does not work the way I expect
bam filter rules condition written 16 days ago by anamabrantesc0 • updated 16 days ago by Jennifer Hillman Jackson25k
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Bowtie mapping result
chip-seq bam sam bowtie filter written 17 days ago by lnaren10
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Problem with Hisat2
bam hisat2 alignment rna-seq written 29 days ago by rptiluswatson0 • updated 29 days ago by Jennifer Hillman Jackson25k
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Compare 2 BAM files for covarage regions
bam bigwig covarage deeptools gff written 4 weeks ago by vebaev130 • updated 29 days ago by Jennifer Hillman Jackson25k
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Variant calling with 5x coverage, human genome
bam samtools alignment snp variant written 5 weeks ago by Daphnis0 • updated 5 weeks ago by Jennifer Hillman Jackson25k
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Filter BAM file by size
bam filter samtools picard written 6 weeks ago by aparicio24570 • updated 6 weeks ago by Jennifer Hillman Jackson25k
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Jobs are not running
chip-seq bam written 7 weeks ago by liuc0 • updated 6 weeks ago by jb_julla0
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Bedgraph file problem
mismatch bam rna-seq chromosome bedgraph written 11 weeks ago by jlocker0 • updated 11 weeks ago by Jennifer Hillman Jackson25k
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Cannot download a bam dataset list
collection dataset usegalaxy.org download bam written 12 weeks ago by spairet10 • updated 12 weeks ago by Jennifer Hillman Jackson25k
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SAM to BAM conversion ERRORS
bam samtools alignment bwa written 4 months ago by amra.dhabalia0 • updated 4 months ago by y.hoogstrate460
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How to create GFF file for HT seq
bam rna-seq written 21 months ago by shraddha.adamane10 • updated 4 months ago by Joey Zou0
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fastq to bam
bam written 22 months ago by aaltaytas0 • updated 4 months ago by fp2150
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FreeBayes returning an empty table
freebayes bam vcf variant galaxy written 4 months ago by annet.kyomuhangi10 • updated 4 months ago by Jennifer Hillman Jackson25k
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FASTA consensus from BWA-MEM mapped MinION data?
bam minion assembly written 9 months ago by catherine.arnold0 • updated 5 months ago by Jennifer Hillman Jackson25k
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BAM files on IGV look empty
bam igv bwa-mem written 7 months ago by EHC10 • updated 5 months ago by Jennifer Hillman Jackson25k
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