Showing: bamreset
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How to create GFF file for HT seq
bam rna-seq written 18 months ago by shraddha.adamane10 • updated 6 weeks ago by Joey Zou0
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fastq to bam
bam written 19 months ago by aaltaytas0 • updated 6 weeks ago by fp2150
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BED to BAM tool error
bam bedtools written 12 months ago by jm.keith60
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Forum: An entertaining read about BWA, Picard, GATK
galaxy software error forum bwa bam samtools written 11 months ago by apozhitkov50 • updated 8 months ago by linying91140
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BAM files fail to be recognized
bam galaxy written 10 months ago by deepti1rao10 • updated 9 months ago by y.hoogstrate460
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Pysam Egg
bam samtools written 8.1 years ago by Erick Antezana570 • updated 8.1 years ago by Davide Cittaro140
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How to integrate and run SoftSearch tool in galaxy.
bam samtools galaxy tool rna-seq written 3.8 years ago by Shirish20 • updated 3.8 years ago by Martin Čech ♦♦ 4.3k
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Tophat: Samtools not found (but dependencies are installed)
bam samtools galaxy tophat rna-seq written 3.7 years ago by daniel.heredia0 • updated 3.7 years ago by y.hoogstrate460
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Error after upload bam file
bam galaxy written 3.7 years ago by GPS20
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IGV option doesn't appear after uploading the BAM file
bam igv written 3.0 years ago by cindy.castelao10 • updated 3.0 years ago by Martin Čech ♦♦ 4.3k
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Whole Exome Sequencing
bam written 3.0 years ago by mia.khanii10 • updated 17 months ago by marcocassone0
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Faulty BAM/SAM files after Bowtie2, filtering and sorting
bam samtools galaxy written 2.1 years ago by nash.claire10 • updated 2.1 years ago by Jennifer Hillman Jackson24k
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Bedtools coverage not accepting file b
bam written 17 months ago by tran_tim10 • updated 17 months ago by Bjoern Gruening4.9k
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Unable to download bam index file
bam tophat rna-seq written 14 months ago by cynthiak1410 • updated 13 months ago by Jennifer Hillman Jackson24k
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Gatk Best Practices With Local Installation Of Galaxy
bam samtools written 6.6 years ago by Camille Stephan30 • updated 6.4 years ago by Jennifer Hillman Jackson24k
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Mpileup Tool
bam samtools mpileup gmod written 6.5 years ago by Keith Funkhouser10 • updated 6.5 years ago by Keith Funkhouser10
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Sort Sam Or Bam
bam samtools written 6.2 years ago by Clare Sloggett120 • updated 6.2 years ago by Jennifer Hillman Jackson24k
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Convert SAM to sorted BAM
bam samtools sam sort written 3.5 years ago by biomonika60 • updated 3.5 years ago by Jennifer Hillman Jackson24k
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1.7k
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Error Setting BAM Metadata
bam samtools galaxy alignment tophat written 3.5 years ago by changk160 • updated 3.5 years ago by Bjoern Gruening4.9k
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