Showing: alignmentreset
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Extract aligned exactly 1 time fron Bowtie2?
samtools bowtie2 galaxy alignment written 8 days ago by star0 • updated 7 days ago by Jennifer Hillman Jackson25k
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44
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2
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Download Bowtie2 alignment
galaxy bowtie alignment assembly written 15 days ago by a.chembath10 • updated 15 days ago by Jennifer Hillman Jackson25k
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51
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Paired end fastq files
galaxy datasets collections alignment rna-seq written 23 days ago by audrey.mohr0 • updated 22 days ago by Jennifer Hillman Jackson25k
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63
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Problem with Hisat2
bam hisat2 alignment rna-seq written 4 weeks ago by rptiluswatson0 • updated 4 weeks ago by Jennifer Hillman Jackson25k
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2
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63
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Variant calling with 5x coverage, human genome
bam samtools alignment snp variant written 5 weeks ago by Daphnis0 • updated 5 weeks ago by Jennifer Hillman Jackson25k
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52
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1
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Checking coverage of yeast whole genome sequencing data
yeast alignment star written 6 weeks ago by skhan30 • updated 6 weeks ago by Jennifer Hillman Jackson25k
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225
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166
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129
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3
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124
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Align.seq metagenomic data
input galaxy mothur align.seq alignment written 11 weeks ago by balagenotech10 • updated 11 weeks ago by Jennifer Hillman Jackson25k
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127
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1
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How to prepare FastQ files for HISAT2
hisat2 rna-seq alignment fastq written 11 weeks ago by skhan30 • updated 11 weeks ago by Jennifer Hillman Jackson25k
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3
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657
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3
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How to download blastn to scaffold from toolshed?
alignment assembly written 2.4 years ago by d.angra50 • updated 3 months ago by B.M.Nicholson0
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191
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1
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how to perform alignment using Hisat2
alignment rna-seq written 3 months ago by Learner 10 • updated 3 months ago by Jennifer Hillman Jackson25k
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HISAT2/TOPHAT alignment to a Rabbit Genome
hisat2 rabbit alignment tophat written 3 months ago by deemergd920 • updated 3 months ago by Jennifer Hillman Jackson25k
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128
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1
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RNA star fails on collection
rna star alignment rna-seq written 3 months ago by Taamslab0 • updated 3 months ago by Jennifer Hillman Jackson25k
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97
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3
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277
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2
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147
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Reference genome from data visualization
alignment written 3 months ago by kry_810 • updated 3 months ago by Jennifer Hillman Jackson25k
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1
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218
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Diamond makedb and Diamond alignment
index local diamond alignment makedb written 4 months ago by linoya0 • updated 4 months ago by Jennifer Hillman Jackson25k
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177
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BWA-MEM Fatal error: Matched on ERROR
alignment software error written 4 months ago by mychung0 • updated 4 months ago by Jennifer Hillman Jackson25k
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BWA error [bwa_aln] 17bp reads: max_diff = 2
software error bwa alignment written 4 months ago by eurioste40 • updated 4 months ago by Jennifer Hillman Jackson25k
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185
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SAM to BAM conversion ERRORS
bam samtools alignment bwa written 4 months ago by amra.dhabalia0 • updated 4 months ago by y.hoogstrate460
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209
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Can we map fastq files with paired ends using bwa mem on galaxy?
alignment written 4 months ago by mychung0 • updated 4 months ago by Devon Ryan1.9k
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157
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Adding a custom genome to a history
custom genome alignment rna-seq written 5 months ago by rafaelccosta30 • updated 5 months ago by Jennifer Hillman Jackson25k
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450
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variable, low alignment rates with HISAT2
hisat2 alignment rna-seq written 5 months ago by stephanie.major10 • updated 5 months ago by ellascottgm0
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