Showing: alignmentreset
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0
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1
answer
1.2k
views
7 follow
1
answer
Error Running Cufflinks On Galaxy
cufflinks bowtie alignment rna-seq written 6.5 years ago by David Robinson10 • updated 6.5 years ago by Jennifer Hillman Jackson23k
2
votes
1
answer
3.7k
views
5 follow
1
answer
Building Bowtie index, failed
rna-seq alignment tophat gff written 2.9 years ago by jingshuowang10 • updated 2.9 years ago by Bjoern Gruening4.8k
3
votes
2
answers
902
views
5 follow
2
answers
Tophat run wont work
alignment tophat written 2.6 years ago by michimaurin20 • updated 2.6 years ago by Martin Čech ♦♦ 4.2k
4
votes
1
answer
395
views
5 follow
1
answer
Filter Bowtie 2 alignement
samtools bowtie alignment written 17 months ago by Mic70 • updated 17 months ago by Devon Ryan1.8k
5
votes
1
answer
272
views
5 follow
1
answer
Batch workflow with two different inputs each time?
batch galaxy alignment workflow multiple inputs written 8 months ago by david.roquis10 • updated 8 months ago by jmchilton1.0k
0
votes
1
answer
1.3k
views
1
answer
Parallel Processing Of Multiple Files On A Multi-Processor Box?
bowtie alignment written 6.9 years ago by Yury Bukhman140 • updated 6.9 years ago by Leandro Hermida80
0
votes
1
answer
776
views
1
answer
From Bowtie Mapping To Gene Names
bowtie alignment written 6.7 years ago by Daniel Elleder30 • updated 6.7 years ago by Anton Nekrutenko1.7k
0
votes
1
answer
2.4k
views
1
answer
Problem With Depth Of Coverage On Bam Files (Gatk Tools)
alignment bwa written 5.5 years ago by Lilach F190 • updated 5.5 years ago by Jennifer Hillman Jackson23k
0
votes
1
answer
2.1k
views
1
answer
Run Bowtie To Estimate Mean Inner Distance Between Mate Pairs
bowtie alignment written 5.3 years ago by Du, Jianguang370 • updated 5.3 years ago by Jennifer Hillman Jackson23k
2
votes
1
answer
524
views
1
answer
TopHat Build in genomes
galaxy alignment tophat rna-seq written 20 months ago by newyasso0 • updated 20 months ago by christophe.habib340
1
vote
1
answer
444
views
1
answer
Tophat errors with alignment summary and insertions data
alignment tophat rna-seq written 16 months ago by darsha_710 • updated 16 months ago by Jennifer Hillman Jackson23k
2
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2
answers
345
views
2
answers
0
votes
2
answers
447
views
2
answers
Galaxy job queue
alignment written 9 months ago by genomicsCourse10 • updated 9 months ago by Jennifer Hillman Jackson23k
4
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1
answer
170
views
1
answer
1
vote
2
answers
32
views
2
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variable, low alignment rates with HISAT2
hisat2 alignment rna-seq written 3 days ago by stephanie.major10 • updated 2 hours ago by ellascottgm0
0
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1
answer
1.2k
views
1
answer
Python Error When Running Bowtie For Illumina
bowtie alignment written 7.7 years ago by Weng Khong Lim10 • updated 7.7 years ago by Dan Webster30
0
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1
answer
1.3k
views
1
answer
Bowtie Alignment
bowtie alignment written 7.1 years ago by Briancon, Nadege10 • updated 7.1 years ago by Nate Coraor3.1k
0
votes
1
answer
724
views
1
answer
Fastq And Index File Upload Problems
cufflinks bowtie alignment rna-seq written 6.9 years ago by Shawn Starkenburg10 • updated 6.9 years ago by Jeremy Goecks2.2k
0
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1
answer
794
views
1
answer
Change Format With "Edit Attributes"
bowtie alignment written 4.7 years ago by Gema Sanz Santos110 • updated 4.7 years ago by Peter Cock1.4k
1
vote
1
answer
896
views
1
answer
Bwa Errors
bowtie alignment bwa written 4.6 years ago by Seattle Oneeechan20 • updated 4.6 years ago by Jennifer Hillman Jackson23k
1
vote
2
answers
2.0k
views
2
answers
Bwa Failing To Index?
alignment bwa written 4.5 years ago by Joshua Orvis100 • updated 16 months ago by 5140796850
0
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1
answer
1.8k
views
1
answer
Mirna-Seq Help
bowtie alignment written 4.2 years ago by Gabriel Calvin30 • updated 4.2 years ago by Hoang, Thanh200
2
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2
answers
1.0k
views
2
answers
uploaded FASTQ not showning in the pulldown menu
alignment written 3.6 years ago by mychung0 • updated 3.6 years ago by Jennifer Hillman Jackson23k
1
vote
1
answer
2.9k
views
1
answer
2
votes
1
answer
2.5k
views
1
answer
Trinity on Galaxy
galaxy alignment rna-seq written 3.4 years ago by mjmv0 • updated 3.4 years ago by vipin20
2
votes
1
answer
774
views
1
answer
Genome build accession for Galaxy build-in genomes
alignment written 2.7 years ago by jirin30 • updated 2.7 years ago by Jennifer Hillman Jackson23k
4
votes
1
answer
1.8k
views
1
answer
Multiple FASTQ files per replicate
galaxy alignment tophat rna-seq written 2.5 years ago by nashedm10 • updated 2.5 years ago by Jennifer Hillman Jackson23k
2
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2
answers
1.6k
views
2
answers
1
vote
1
answer
1.3k
views
1
answer
Galaxy "This job is waiting to run" - but it never runs!!
galaxy alignment bwa written 2.0 years ago by kelly_eggleton10 • updated 2.0 years ago by Jennifer Hillman Jackson23k
2
votes
2
answers
603
views
2
answers
Getting RT stops
rt mapping bowtie alignment rna-seq written 23 months ago by mabdelsa10
1
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1
answer
546
views
1
answer
1
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0
answers
454
views
0
answers
Organism names after Megablast?
alignment written 21 months ago by etiennewalex30
1
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0
answers
480
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0
answers
1
vote
1
answer
420
views
1
answer
Galaxy problems plus tech info
galaxy alignment written 20 months ago by fradiancona20 • updated 20 months ago by Jennifer Hillman Jackson23k
1
vote
1
answer
320
views
1
answer
Job does not seem to complete
alignment written 16 months ago by rarango10 • updated 16 months ago by Jennifer Hillman Jackson23k
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