Showing: alignmentreset
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0
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1
answer
1.5k
views
7 follow
1
answer
Error Running Cufflinks On Galaxy
cufflinks bowtie alignment rna-seq written 7.2 years ago by David Robinson10 • updated 7.2 years ago by Jennifer Hillman Jackson25k
2
votes
1
answer
4.1k
views
5 follow
1
answer
Building Bowtie index, failed
rna-seq alignment tophat gff written 3.6 years ago by jingshuowang10 • updated 3.6 years ago by Bjoern Gruening5.1k
3
votes
2
answers
1.2k
views
5 follow
2
answers
Tophat run wont work
alignment tophat written 3.3 years ago by michimaurin20 • updated 3.3 years ago by Martin Čech ♦♦ 4.8k
4
votes
1
answer
690
views
5 follow
1
answer
Filter Bowtie 2 alignement
samtools bowtie alignment written 2.1 years ago by Mic70 • updated 2.1 years ago by Devon Ryan1.9k
5
votes
1
answer
514
views
5 follow
1
answer
Batch workflow with two different inputs each time?
batch galaxy alignment workflow multiple inputs written 16 months ago by david.roquis30 • updated 16 months ago by jmchilton1.1k
4
votes
1
answer
226
views
5 follow
1
answer
BWA error [bwa_aln] 17bp reads: max_diff = 2
software error bwa alignment written 7 months ago by eurioste40 • updated 7 months ago by Jennifer Hillman Jackson25k
0
votes
1
answer
1.6k
views
1
answer
Parallel Processing Of Multiple Files On A Multi-Processor Box?
bowtie alignment written 7.6 years ago by Yury Bukhman140 • updated 7.6 years ago by Leandro Hermida80
0
votes
1
answer
979
views
1
answer
From Bowtie Mapping To Gene Names
bowtie alignment written 7.4 years ago by Daniel Elleder30 • updated 7.4 years ago by Anton Nekrutenko1.7k
0
votes
1
answer
3.0k
views
1
answer
Problem With Depth Of Coverage On Bam Files (Gatk Tools)
alignment bwa written 6.2 years ago by Lilach F190 • updated 6.2 years ago by Jennifer Hillman Jackson25k
0
votes
1
answer
2.4k
views
1
answer
Run Bowtie To Estimate Mean Inner Distance Between Mate Pairs
bowtie alignment written 6.0 years ago by Du, Jianguang370 • updated 6.0 years ago by Jennifer Hillman Jackson25k
2
votes
1
answer
759
views
1
answer
TopHat Build in genomes
galaxy alignment tophat rna-seq written 2.4 years ago by newyasso0 • updated 2.4 years ago by christophe.habib340
2
votes
4
answers
784
views
4
answers
100-way multiZ alignments (with hg38 as reference)
alignment written 2.3 years ago by pkalungi10 • updated 2.2 years ago by ana1620
1
vote
1
answer
682
views
1
answer
Tophat errors with alignment summary and insertions data
alignment tophat rna-seq written 2.1 years ago by darsha_710 • updated 2.0 years ago by Jennifer Hillman Jackson25k
2
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2
answers
641
views
2
answers
0
votes
2
answers
827
views
2
answers
Galaxy job queue
alignment written 17 months ago by genomicsCourse10 • updated 17 months ago by Jennifer Hillman Jackson25k
4
votes
1
answer
527
views
1
answer
1
vote
2
answers
678
views
2
answers
variable, low alignment rates with HISAT2
hisat2 alignment rna-seq written 8 months ago by stephanie.major10 • updated 8 months ago by ellascottgm0
0
votes
1
answer
1.4k
views
1
answer
Python Error When Running Bowtie For Illumina
bowtie alignment written 8.4 years ago by Weng Khong Lim10 • updated 8.4 years ago by Dan Webster30
0
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1
answer
1.5k
views
1
answer
Bowtie Alignment
bowtie alignment written 7.8 years ago by Briancon, Nadege10 • updated 7.8 years ago by Nate Coraor3.2k
0
votes
1
answer
902
views
1
answer
Fastq And Index File Upload Problems
cufflinks bowtie alignment rna-seq written 7.6 years ago by Shawn Starkenburg10 • updated 7.6 years ago by Jeremy Goecks2.2k
0
votes
1
answer
1.0k
views
1
answer
Change Format With "Edit Attributes"
bowtie alignment written 5.4 years ago by Gema Sanz Santos110 • updated 5.4 years ago by Peter Cock1.4k
1
vote
1
answer
1.1k
views
1
answer
Bwa Errors
bowtie alignment bwa written 5.2 years ago by Seattle Oneeechan20 • updated 5.2 years ago by Jennifer Hillman Jackson25k
1
vote
2
answers
2.4k
views
2
answers
Bwa Failing To Index?
alignment bwa written 5.2 years ago by Joshua Orvis100 • updated 2.1 years ago by 5140796850
0
votes
1
answer
2.2k
views
1
answer
Mirna-Seq Help
bowtie alignment written 4.9 years ago by Gabriel Calvin30 • updated 4.9 years ago by Hoang, Thanh200
2
votes
2
answers
1.3k
views
2
answers
uploaded FASTQ not showning in the pulldown menu
alignment written 4.3 years ago by mychung0 • updated 4.3 years ago by Jennifer Hillman Jackson25k
1
vote
1
answer
3.1k
views
1
answer
2
votes
1
answer
2.8k
views
1
answer
Trinity on Galaxy
galaxy alignment rna-seq written 4.0 years ago by mjmv0 • updated 4.0 years ago by vipin20
2
votes
1
answer
1.1k
views
1
answer
Genome build accession for Galaxy build-in genomes
alignment written 3.4 years ago by jirin30 • updated 3.4 years ago by Jennifer Hillman Jackson25k
4
votes
1
answer
2.4k
views
1
answer
Multiple FASTQ files per replicate
galaxy alignment tophat rna-seq written 3.2 years ago by nashedm10 • updated 3.2 years ago by Jennifer Hillman Jackson25k
2
votes
2
answers
2.0k
views
2
answers
1
vote
1
answer
1.7k
views
1
answer
Galaxy "This job is waiting to run" - but it never runs!!
galaxy alignment bwa written 2.7 years ago by kelly_eggleton10 • updated 2.7 years ago by Jennifer Hillman Jackson25k
2
votes
2
answers
818
views
2
answers
Getting RT stops
rt mapping bowtie alignment rna-seq written 2.6 years ago by mabdelsa10
1
vote
1
answer
775
views
1
answer
1
vote
0
answers
674
views
0
answers
Organism names after Megablast?
alignment written 2.4 years ago by etiennewalex30
1
vote
0
answers
661
views
0
answers
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