Showing: alignmentreset
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Issue with stitch MAF block tool in galaxy
galaxy alignment written 6 months ago by kkarri0 • updated 6 months ago by Jennifer Hillman Jackson24k
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FeatureCount output does not match view in IGV browser
galaxy alignment rna-seq written 6 months ago by hosheaa20 • updated 6 months ago by Jennifer Hillman Jackson24k
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Error with BWA in local Galaxy
galaxy alignment written 6 months ago by yesabelst0 • updated 6 months ago by Jennifer Hillman Jackson24k
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Poor overall alignment rates
galaxy alignment rna-seq written 7 months ago by egonz34010 • updated 7 months ago by Jennifer Hillman Jackson24k
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248
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Bowtie2 not running
alignment written 7 months ago by ndamas20 • updated 7 months ago by Jennifer Hillman Jackson24k
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Paired End FASTQ files
chip-seq galaxy alignment written 8 months ago by Mahesh.Hegde0 • updated 8 months ago by Jennifer Hillman Jackson24k
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genome of interest is not listed
alignment rna-seq written 9 months ago by jiezhou680 • updated 9 months ago by Jennifer Hillman Jackson24k
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Aligning more than 2 sequences
variant analysis alignment ngs written 10 months ago by ppurkayastha201010 • updated 10 months ago by Jennifer Hillman Jackson24k
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remove in mapping results the reads that aligned > 1 times
galaxy bowtie alignment written 10 months ago by cpozacarrion0 • updated 10 months ago by Devon Ryan1.9k
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rna seq read cleaning
alignment rna-seq written 10 months ago by rahul.sg980 • updated 10 months ago by luca.marisaldi30
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Problems to mapping in Bowtie 2 ??
galaxy snp alignment written 10 months ago by cpozacarrion0 • updated 10 months ago by Jennifer Hillman Jackson24k
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5 follow
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Batch workflow with two different inputs each time?
batch galaxy alignment workflow multiple inputs written 10 months ago by david.roquis20 • updated 10 months ago by jmchilton1.0k
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Reference genome can it be partial?
rna-seq alignment tophat assembly written 11 months ago by RACHAMPION10 • updated 11 months ago by shengweima0
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Galaxy job queue
alignment written 11 months ago by genomicsCourse10 • updated 11 months ago by Jennifer Hillman Jackson24k
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How to convert unaligned reads to Fastq format after initial alignment?
bowtie alignment written 11 months ago by chalagarciad0 • updated 11 months ago by Guy Reeves1.0k
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Galaxy for alignment for genomes of bacterial species
alignment written 12 months ago by qureshifsd0 • updated 12 months ago by Martin Čech ♦♦ 4.3k
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MAF to VCF showing Indels and snps
samtools alignment written 12 months ago by kmurph550 • updated 12 months ago by Jennifer Hillman Jackson24k
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use bowtie for illumina with phred33?
bowtie alignment rna-seq written 13 months ago by valdirbarth20 • updated 13 months ago by Jennifer Hillman Jackson24k
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310
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loading Fastq files
galaxy alignment written 13 months ago by federica.isidori0 • updated 13 months ago by Martin Čech ♦♦ 4.3k
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