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<prev • 442 results • page 1 of 13 • next >
0
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2
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101
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GEO SRA fastq-dump with very low mapping rate (Galaxy)
galaxy alignment rna-seq written 10 weeks ago by human • 0
0
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1
answer
13
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1
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Stitch MAF Blocks output mostly empty
alignment written 23 hours ago by mlwright • 0
0
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1
answer
41
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1
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Variant calling with 5x coverage, human genome
bam samtools alignment snp variant written 10 days ago by Daphnis • 0 • updated 7 days ago by Jennifer Hillman Jackson ♦ 24k
2
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1
answer
33
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1
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Checking coverage of yeast whole genome sequencing data
yeast alignment star written 11 days ago by skhan • 30 • updated 11 days ago by Jennifer Hillman Jackson ♦ 24k
5
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2
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56
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2
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Featurecounts' added built-in annotations
rna-seq gene annotation alignment featurecounts written 14 days ago by p.barnett • 40 • updated 13 days ago by Jennifer Hillman Jackson ♦ 24k
2
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2
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184
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2
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Trying to upload own reference genome to use in Bowtie2 and BWA aligner, having trouble with FTP filezilla
bowtie alignment bwa rna-seq written 4 weeks ago by hafsa2009 • 0
2
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2
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108
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2
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Create Circos Builder
assembly circos galaxy visualization alignment written 6 weeks ago by sarbast.ihsan • 0
0
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3
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97
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3
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Problem with Align.Seqs
custom galaxy genome alignment fasta written 6 weeks ago by cjroy • 0
1
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1
answer
108
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1
answer
BAM header using BWA-MEM in galaxy compared with GATK resource bundle (hg38) - deprecated tools in Galaxy
deprecated gatk snp bwa alignment written 6 weeks ago by Joan Gibert • 20 • updated 6 weeks ago by Jennifer Hillman Jackson ♦ 24k
1
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1
answer
69
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1
answer
Align.seq metagenomic data
input galaxy mothur align.seq alignment written 6 weeks ago by balagenotech • 10 • updated 6 weeks ago by Jennifer Hillman Jackson ♦ 24k
0
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1
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95
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1
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How to prepare FastQ files for HISAT2
hisat2 rna-seq alignment fastq written 7 weeks ago by skhan • 30 • updated 7 weeks ago by Jennifer Hillman Jackson ♦ 24k
0
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3
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629
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3
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How to download blastn to scaffold from toolshed?
alignment assembly written 2.3 years ago by d.angra • 50 • updated 9 weeks ago by B.M.Nicholson • 0
0
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1
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137
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1
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how to perform alignment using Hisat2
alignment rna-seq written 10 weeks ago by Learner • 10 • updated 9 weeks ago by Jennifer Hillman Jackson ♦ 24k
0
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1
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70
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1
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HISAT2/TOPHAT alignment to a Rabbit Genome
hisat2 rabbit alignment tophat written 10 weeks ago by deemergd92 • 0 • updated 10 weeks ago by Jennifer Hillman Jackson ♦ 24k
0
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1
answer
100
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1
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RNA star fails on collection
rna star alignment rna-seq written 10 weeks ago by Taamslab • 0 • updated 10 weeks ago by Jennifer Hillman Jackson ♦ 24k
0
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1
answer
77
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1
answer
ERROR running Realigner Target Creator (GATK intervals)
gatk galaxy jarfile alignment written 10 weeks ago by sbernazz • 0 • updated 10 weeks ago by Jennifer Hillman Jackson ♦ 24k
3
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2
answers
229
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2
answers
Variant mapping workflow and tutorial in Galaxy
cloudmap fastqsanger fastqsanger.gz snp alignment written 12 weeks ago by Joachim.Berger • 40
0
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1
answer
118
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1
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Reference genome from data visualization
alignment written 12 weeks ago by kry_8 • 10 • updated 12 weeks ago by Jennifer Hillman Jackson ♦ 24k
0
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1
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157
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1
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Trimmomatic output results in extremely low alignment using bowtie2
trimmomatic bowtie2 alignment written 12 weeks ago by danielryan9287 • 0 • updated 12 weeks ago by Jennifer Hillman Jackson ♦ 24k
0
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1
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162
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1
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Diamond makedb and Diamond alignment
index local diamond alignment makedb written 3 months ago by linoya • 0 • updated 12 weeks ago by Jennifer Hillman Jackson ♦ 24k
0
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1
answer
145
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1
answer
BWA-MEM Fatal error: Matched on ERROR
alignment software error written 3 months ago by mychung • 0 • updated 3 months ago by Jennifer Hillman Jackson ♦ 24k
4
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1
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102
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5 follow
1
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BWA error [bwa_aln] 17bp reads: max_diff = 2
software error bwa alignment written 3 months ago by eurioste • 40 • updated 3 months ago by Jennifer Hillman Jackson ♦ 24k
1
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1
answer
138
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1
answer
SAM to BAM conversion ERRORS
bam samtools alignment bwa written 3 months ago by amra.dhabalia • 0 • updated 3 months ago by y.hoogstrate • 460
1
vote
1
answer
155
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1
answer
Can we map fastq files with paired ends using bwa mem on galaxy?
alignment written 3 months ago by mychung • 0 • updated 3 months ago by Devon Ryan • 1.9k
0
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1
answer
233
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1
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How many should multiple alignment of tophat-out in Human RNA-seqs?
alignment tophat rna-seq written 4 months ago by Leila Kian • 0 • updated 4 months ago by Jennifer Hillman Jackson ♦ 24k
1
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1
answer
159
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1
answer
Are there maximum Penalty Scores in BWA-MEM?
bwa bwa-mem alignment written 5 months ago by Mesohexaploid • 10
0
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1
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134
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1
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Adding a custom genome to a history
custom genome alignment rna-seq written 4 months ago by rafaelccosta3 • 0 • updated 4 months ago by Jennifer Hillman Jackson ♦ 24k
1
vote
2
answers
372
views
2
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variable, low alignment rates with HISAT2
hisat2 alignment rna-seq written 4 months ago by stephanie.major • 10 • updated 4 months ago by ellascottgm • 0
1
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1
answer
162
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1
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storage space and STAR analysis
quota account alignment tool error written 4 months ago by khksw0403 • 10 • updated 4 months ago by Jennifer Hillman Jackson ♦ 24k
2
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1
answer
216
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1
answer
Can contamination cause alignment errors and how can I trim contaminants away?
rna star trimming alignment rna-seq written 4 months ago by Mesohexaploid • 10 • updated 4 months ago by Jennifer Hillman Jackson ♦ 24k
0
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1
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144
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1
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Bowtie2 samples still in queue after 48 hours
chip-seq galaxy bowtie alignment written 4 months ago by wcheng • 10 • updated 4 months ago by Jennifer Hillman Jackson ♦ 24k
1
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2
answers
177
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2
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Adding reference genome to Galaxy
galaxy alignment written 4 months ago by tylertibetli • 0
2
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2
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184
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2
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Listing genome reference
alignment written 5 months ago by tabory11 • 0 • updated 4 months ago by Mesohexaploid • 10
2
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1
answer
199
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1
answer
BWA for Illumina
bwa humam wes exome alignment written 6 months ago by thaisenayane • 10 • updated 6 months ago by Jennifer Hillman Jackson ♦ 24k
0
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1
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375
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1
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Considerations for trimming poor quality Illumina MiSeq paired end reads
qa assembly alignment fastq written 6 months ago by drthippeshhs • 0 • updated 6 months ago by Jennifer Hillman Jackson ♦ 24k
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