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0
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30
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1
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Reference Annotation error using HISAT2
rna-seq hisat tophat alignment written 6 days ago by ewilli28 • 0 • updated 23 hours ago by Jennifer Hillman Jackson ♦ 25k
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1
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29
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1
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Issue visualizing RNA-seq HISAT outputs in UCSC Genome Browser
ucsc genome browser rna-seq hisat alignment written 6 days ago by Ray_Enke • 0 • updated 1 day ago by Jennifer Hillman Jackson ♦ 25k
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1
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25
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1
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genomic regions without reads
alignment written 6 days ago by kniazeva • 0 • updated 1 day ago by Jennifer Hillman Jackson ♦ 25k
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2
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66
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2
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Single cell RNA seq data set alignment
alignment rna-seq written 14 days ago by ailin_leticia.buzzi • 0
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0
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34
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0
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An error while using Interval2MAF1 tool on usegalaxy.org
galaxy help alignment software error written 7 days ago by sap940 • 0
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1
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50
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1
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Dot plot between two sequences
alignment assembly written 11 days ago by ppurkayastha2010 • 20 • updated 11 days ago by Hotz, Hans-Rudolf • 1.8k
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1
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70
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1
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How to align sequences with MAFFT
mafft galaxy alignment input fasta written 22 days ago by winklma01 • 0 • updated 20 days ago by Jennifer Hillman Jackson ♦ 25k
0
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1
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78
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1
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Filtering BAM files from HISAT2
bam hisat2 alignment rna-seq written 29 days ago by dexter.myrick • 30 • updated 29 days ago by Jennifer Hillman Jackson ♦ 25k
0
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1
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388
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1
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galGal5 reference genome and indexes
indexes genome alignment assembly written 11 months ago by caroline.brossas • 0 • updated 5 weeks ago by rasou2ba • 0
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0
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56
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0
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MLSA analysis concatenate genes
alignment gene concatenation mlsa analysis written 5 weeks ago by hopeserepa • 0
2
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1
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71
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1
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Is it possible to group many MAF files?
maf text-mani cat alignment merge written 7 weeks ago by mlwright • 30 • updated 7 weeks ago by Jennifer Hillman Jackson ♦ 25k
1
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1
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137
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1
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Error when trying to stitch MAF blocks
software error alignment written 10 weeks ago by mlwright • 30 • updated 10 weeks ago by Jennifer Hillman Jackson ♦ 25k
0
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1
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125
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1
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Extract aligned exactly 1 time fron Bowtie2?
samtools bowtie2 galaxy alignment written 3 months ago by star • 0 • updated 3 months ago by Jennifer Hillman Jackson ♦ 25k
1
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1
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148
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1
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Why gene counts from RNA STAR don't match total uniquely mapped counts
galaxy alignment rna-seq written 3 months ago by daniel.kim • 30 • updated 3 months ago by Devon Ryan • 1.9k
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2
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119
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2
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How to submit jobs to Stampede from Galaxy Main
alignment rna-seq written 3 months ago by xiaohe • 10
0
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1
answer
153
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1
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Download Bowtie2 alignment
galaxy bowtie alignment assembly written 3 months ago by a.chembath1 • 0 • updated 3 months ago by Jennifer Hillman Jackson ♦ 25k
0
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1
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130
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1
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RNA-seq data to check impact of PCR duplicates
htseq rna-seq galaxy alignment featurecounts written 3 months ago by hasanul101 • 0 • updated 3 months ago by Jennifer Hillman Jackson ♦ 25k
0
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1
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175
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1
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Paired end fastq files
galaxy datasets collections alignment rna-seq written 3 months ago by audrey.mohr • 0 • updated 3 months ago by Jennifer Hillman Jackson ♦ 25k
0
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1
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126
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1
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Problem with Hisat2
bam hisat2 alignment rna-seq written 3 months ago by rptiluswatson • 0 • updated 3 months ago by Jennifer Hillman Jackson ♦ 25k
1
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2
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236
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2
answers
GEO SRA fastq-dump with very low mapping rate (Galaxy)
galaxy alignment rna-seq written 6 months ago by human • 10
0
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1
answer
113
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1
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Stitch MAF Blocks output mostly empty
alignment written 4 months ago by mlwright • 30
0
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1
answer
129
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1
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Variant calling with 5x coverage, human genome
bam samtools alignment snp variant written 4 months ago by Daphnis • 0 • updated 4 months ago by Jennifer Hillman Jackson ♦ 25k
2
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1
answer
157
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1
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Checking coverage of yeast whole genome sequencing data
yeast alignment star written 4 months ago by skhan • 40 • updated 4 months ago by Jennifer Hillman Jackson ♦ 25k
5
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2
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267
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2
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Featurecounts' added built-in annotations
rna-seq gene annotation alignment featurecounts written 4 months ago by p.barnett • 50 • updated 4 months ago by Jennifer Hillman Jackson ♦ 25k
2
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2
answers
384
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2
answers
Trying to upload own reference genome to use in Bowtie2 and BWA aligner, having trouble with FTP filezilla
bowtie alignment bwa rna-seq written 5 months ago by hafsa2009 • 0
2
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1
answer
378
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1
answer
Create Circos Builder
assembly circos galaxy visualization alignment written 5 months ago by sarbast.ihsan • 0
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3
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216
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3
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Problem with Align.Seqs
custom galaxy genome alignment fasta written 5 months ago by cjroy • 0
1
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1
answer
239
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1
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BAM header using BWA-MEM in galaxy compared with GATK resource bundle (hg38) - deprecated tools in Galaxy
deprecated gatk snp bwa alignment written 5 months ago by Joan Gibert • 20 • updated 5 months ago by Jennifer Hillman Jackson ♦ 25k
1
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1
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172
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1
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Align.seq metagenomic data
input galaxy mothur align.seq alignment written 5 months ago by balagenotech • 10 • updated 5 months ago by Jennifer Hillman Jackson ♦ 25k
0
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1
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302
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1
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How to prepare FastQ files for HISAT2
hisat2 rna-seq alignment fastq written 5 months ago by skhan • 40 • updated 5 months ago by Jennifer Hillman Jackson ♦ 25k
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3
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764
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3
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How to download blastn to scaffold from toolshed?
alignment assembly written 2.6 years ago by d.angra • 50 • updated 6 months ago by B.M.Nicholson • 0
0
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1
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369
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1
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how to perform alignment using Hisat2
alignment rna-seq written 6 months ago by Learner • 10 • updated 6 months ago by Jennifer Hillman Jackson ♦ 25k
0
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1
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194
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1
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HISAT2/TOPHAT alignment to a Rabbit Genome
hisat2 rabbit alignment tophat written 6 months ago by deemergd92 • 0 • updated 6 months ago by Jennifer Hillman Jackson ♦ 25k
0
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1
answer
203
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1
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RNA star fails on collection
rna star alignment rna-seq written 6 months ago by Taamslab • 0 • updated 6 months ago by Jennifer Hillman Jackson ♦ 25k
0
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1
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159
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1
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ERROR running Realigner Target Creator (GATK intervals)
gatk galaxy jarfile alignment written 6 months ago by sbernazz • 0 • updated 6 months ago by Jennifer Hillman Jackson ♦ 25k
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