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<prev • 450 results • page 1 of 13 • next >
0
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43
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Error when trying to stitch MAF blocks
software error alignment written 13 days ago by mlwright • 0 • updated 13 days ago by Jennifer Hillman Jackson ♦ 25k
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1
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61
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1
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Extract aligned exactly 1 time fron Bowtie2?
samtools bowtie2 galaxy alignment written 5 weeks ago by star • 0 • updated 5 weeks ago by Jennifer Hillman Jackson ♦ 25k
1
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1
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81
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1
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Why gene counts from RNA STAR don't match total uniquely mapped counts
galaxy alignment rna-seq written 5 weeks ago by daniel.kim • 30 • updated 5 weeks ago by Devon Ryan • 1.9k
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2
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73
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2
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How to submit jobs to Stampede from Galaxy Main
alignment rna-seq written 5 weeks ago by xiaohe • 10
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1
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89
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1
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Download Bowtie2 alignment
galaxy bowtie alignment assembly written 6 weeks ago by a.chembath1 • 0 • updated 6 weeks ago by Jennifer Hillman Jackson ♦ 25k
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1
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67
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1
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RNA-seq data to check impact of PCR duplicates
htseq rna-seq galaxy alignment featurecounts written 7 weeks ago by hasanul101 • 0 • updated 7 weeks ago by Jennifer Hillman Jackson ♦ 25k
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1
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100
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1
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Paired end fastq files
galaxy datasets collections alignment rna-seq written 7 weeks ago by audrey.mohr • 0 • updated 7 weeks ago by Jennifer Hillman Jackson ♦ 25k
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1
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81
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1
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Problem with Hisat2
bam hisat2 alignment rna-seq written 8 weeks ago by rptiluswatson • 0 • updated 8 weeks ago by Jennifer Hillman Jackson ♦ 25k
1
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2
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168
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2
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GEO SRA fastq-dump with very low mapping rate (Galaxy)
galaxy alignment rna-seq written 4 months ago by human • 10
0
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1
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66
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1
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Stitch MAF Blocks output mostly empty
alignment written 8 weeks ago by mlwright • 0
0
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1
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87
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1
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Variant calling with 5x coverage, human genome
bam samtools alignment snp variant written 9 weeks ago by Daphnis • 0 • updated 9 weeks ago by Jennifer Hillman Jackson ♦ 25k
2
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1
answer
81
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1
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Checking coverage of yeast whole genome sequencing data
yeast alignment star written 10 weeks ago by skhan • 30 • updated 10 weeks ago by Jennifer Hillman Jackson ♦ 25k
5
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2
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177
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2
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Featurecounts' added built-in annotations
rna-seq gene annotation alignment featurecounts written 10 weeks ago by p.barnett • 50 • updated 10 weeks ago by Jennifer Hillman Jackson ♦ 25k
2
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2
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259
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2
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Trying to upload own reference genome to use in Bowtie2 and BWA aligner, having trouble with FTP filezilla
bowtie alignment bwa rna-seq written 3 months ago by hafsa2009 • 0
2
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1
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234
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1
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Create Circos Builder
assembly circos galaxy visualization alignment written 3 months ago by sarbast.ihsan • 0
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3
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161
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3
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Problem with Align.Seqs
custom galaxy genome alignment fasta written 3 months ago by cjroy • 0
1
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1
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155
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1
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BAM header using BWA-MEM in galaxy compared with GATK resource bundle (hg38) - deprecated tools in Galaxy
deprecated gatk snp bwa alignment written 3 months ago by Joan Gibert • 20 • updated 3 months ago by Jennifer Hillman Jackson ♦ 25k
1
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1
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118
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1
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Align.seq metagenomic data
input galaxy mothur align.seq alignment written 3 months ago by balagenotech • 10 • updated 3 months ago by Jennifer Hillman Jackson ♦ 25k
0
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1
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176
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1
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How to prepare FastQ files for HISAT2
hisat2 rna-seq alignment fastq written 3 months ago by skhan • 30 • updated 3 months ago by Jennifer Hillman Jackson ♦ 25k
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3
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693
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3
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How to download blastn to scaffold from toolshed?
alignment assembly written 2.4 years ago by d.angra • 50 • updated 4 months ago by B.M.Nicholson • 0
0
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1
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249
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1
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how to perform alignment using Hisat2
alignment rna-seq written 4 months ago by Learner • 10 • updated 4 months ago by Jennifer Hillman Jackson ♦ 25k
0
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1
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117
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1
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HISAT2/TOPHAT alignment to a Rabbit Genome
hisat2 rabbit alignment tophat written 4 months ago by deemergd92 • 0 • updated 4 months ago by Jennifer Hillman Jackson ♦ 25k
0
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1
answer
155
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1
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RNA star fails on collection
rna star alignment rna-seq written 4 months ago by Taamslab • 0 • updated 4 months ago by Jennifer Hillman Jackson ♦ 25k
0
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1
answer
113
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1
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ERROR running Realigner Target Creator (GATK intervals)
gatk galaxy jarfile alignment written 4 months ago by sbernazz • 0 • updated 4 months ago by Jennifer Hillman Jackson ♦ 25k
3
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2
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315
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2
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Variant mapping workflow and tutorial in Galaxy
cloudmap fastqsanger fastqsanger.gz snp alignment written 4 months ago by Joachim.Berger • 40
0
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1
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174
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1
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Reference genome from data visualization
alignment written 4 months ago by kry_8 • 10 • updated 4 months ago by Jennifer Hillman Jackson ♦ 25k
0
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1
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255
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1
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Trimmomatic output results in extremely low alignment using bowtie2
trimmomatic bowtie2 alignment written 4 months ago by danielryan9287 • 0 • updated 4 months ago by Jennifer Hillman Jackson ♦ 25k
0
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1
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269
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1
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Diamond makedb and Diamond alignment
index local diamond alignment makedb written 4 months ago by linoya • 0 • updated 4 months ago by Jennifer Hillman Jackson ♦ 25k
0
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1
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199
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1
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BWA-MEM Fatal error: Matched on ERROR
alignment software error written 5 months ago by mychung • 0 • updated 5 months ago by Jennifer Hillman Jackson ♦ 25k
4
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1
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148
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5 follow
1
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BWA error [bwa_aln] 17bp reads: max_diff = 2
software error bwa alignment written 5 months ago by eurioste • 40 • updated 5 months ago by Jennifer Hillman Jackson ♦ 25k
1
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1
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234
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1
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SAM to BAM conversion ERRORS
bam samtools alignment bwa written 5 months ago by amra.dhabalia • 0 • updated 5 months ago by y.hoogstrate • 460
1
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1
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260
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1
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Can we map fastq files with paired ends using bwa mem on galaxy?
alignment written 5 months ago by mychung • 0 • updated 5 months ago by Devon Ryan • 1.9k
0
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1
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337
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1
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How many should multiple alignment of tophat-out in Human RNA-seqs?
alignment tophat rna-seq written 6 months ago by Leila Kian • 10 • updated 6 months ago by Jennifer Hillman Jackson ♦ 25k
1
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1
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212
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1
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Are there maximum Penalty Scores in BWA-MEM?
bwa bwa-mem alignment written 7 months ago by Mesohexaploid • 10
0
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1
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186
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1
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Adding a custom genome to a history
custom genome alignment rna-seq written 6 months ago by rafaelccosta3 • 0 • updated 6 months ago by Jennifer Hillman Jackson ♦ 25k
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