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4
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4
answers
61
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4
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>90% aligned concordantly 0 times ChIP-seq Bowtie2
chip-seq bowtie alignment written 9 days ago by Gema Sanz Santos • 110
0
votes
2
answers
42
views
2
answers
genome mappability and peak calling
chip-seq alignment written 18 days ago by Crevi • 0
1
vote
1
answer
46
views
1
answer
Bowtie2 not running
alignment written 16 days ago by ndamas • 10 • updated 16 days ago by Jennifer Hillman Jackson ♦ 22k
0
votes
1
answer
59
views
1
answer
Newbie wanting to align Ion Torrent PGM data to mitochondrial DNA template
alignment written 4 weeks ago by mpugh • 0 • updated 4 weeks ago by Jennifer Hillman Jackson ♦ 22k
1
vote
3
answers
131
views
3
answers
RNA STAR Gapped-read mapper for RNA-seq data
rnastar rnaseq alignment memory-failure written 6 weeks ago by negin_valizadegan • 0
1
vote
1
answer
138
views
1
answer
RNA STAR FATAL PARAMETER ERROR: limitGenomeGenerateRAM=31000000000is too small for your genome
alignment rna-seq written 5 weeks ago by Kaylinnette.Pinet • 0 • updated 5 weeks ago by Jennifer Hillman Jackson ♦ 22k
2
votes
2
answers
71
views
2
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Paired End FASTQ files
chip-seq galaxy alignment written 5 weeks ago by Mahesh.Hegde • 0 • updated 5 weeks ago by Jennifer Hillman Jackson ♦ 22k
1
vote
1
answer
118
views
1
answer
Intersect the intervals of two datasets (Galaxy Version 1.0.0)
chip-seq alignment written 7 weeks ago by mdp07vm • 20 • updated 7 weeks ago by Jennifer Hillman Jackson ♦ 22k
3
votes
1
answer
65
views
1
answer
HELP! My HT seq table counts are in zero
htseq rna-seq alignment genome-mismatch written 7 weeks ago by j.gonzalez10 • 0 • updated 7 weeks ago by Jennifer Hillman Jackson ♦ 22k
0
votes
1
answer
59
views
1
answer
genome of interest is not listed
alignment rna-seq written 9 weeks ago by jiezhou68 • 0 • updated 9 weeks ago by Jennifer Hillman Jackson ♦ 22k
0
votes
2
answers
61
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2
answers
TOPHAT align half of the reads
alignment tophat rna-seq written 9 weeks ago by vit.filippo • 0
0
votes
1
answer
73
views
1
answer
Getting an error when trying to align sequence data with bowtie2
chip-seq galaxy alignment written 9 weeks ago by mohammedtleis • 0 • updated 9 weeks ago by Jennifer Hillman Jackson ♦ 22k
2
votes
1
answer
69
views
1
answer
TopHat Error stating that (installed) Bowtie2 is not installed
rna-seq galaxy bowtie software error alignment written 9 weeks ago by mohammedtleis • 0
2
votes
1
answer
78
views
1
answer
How to align 500 fastq unpaired files to an uploaded reference and put every single result to a new folder?
alignment mapping batch fastq written 11 weeks ago by msprindzhuk • 40 • updated 10 weeks ago by Guy Reeves • 970
1
vote
1
answer
93
views
1
answer
Aligning more than 2 sequences
variant analysis alignment ngs written 3 months ago by ppurkayastha2010 • 10 • updated 12 weeks ago by Jennifer Hillman Jackson ♦ 22k
0
votes
1
answer
144
views
1
answer
remove in mapping results the reads that aligned > 1 times
galaxy bowtie alignment written 3 months ago by cpozacarrion • 0 • updated 3 months ago by Devon Ryan • 1.6k
2
votes
2
answers
171
views
2
answers
rna seq read cleaning
alignment rna-seq written 3 months ago by rahul.sg98 • 0 • updated 3 months ago by luca.marisaldi • 30
0
votes
1
answer
104
views
1
answer
Problems to mapping in Bowtie 2 ??
galaxy snp alignment written 3 months ago by cpozacarrion • 0 • updated 3 months ago by Jennifer Hillman Jackson ♦ 22k
5
votes
1
answer
153
views
5 follow
1
answer
Batch workflow with two different inputs each time?
batch galaxy alignment workflow multiple inputs written 3 months ago by david.roquis • 10 • updated 3 months ago by jmchilton ♦ 1000
0
votes
2
answers
145
views
2
answers
Reference genome can it be partial?
rna-seq alignment tophat assembly written 4 months ago by RACHAMPION • 10 • updated 4 months ago by shengweima • 0
0
votes
2
answers
309
views
2
answers
Galaxy job queue
alignment written 4 months ago by genomicsCourse • 10 • updated 4 months ago by Jennifer Hillman Jackson ♦ 22k
1
vote
2
answers
238
views
2
answers
How to convert unaligned reads to Fastq format after initial alignment?
bowtie alignment written 4 months ago by chalagarciad • 0 • updated 4 months ago by Guy Reeves • 970
0
votes
0
answers
209
views
0
answers
Alignment of entire bacterial genomes
galaxy alignment written 5 months ago by qureshifsd • 0
0
votes
0
answers
163
views
0
answers
Galaxy for alignment for genomes of bacterial species
alignment written 5 months ago by qureshifsd • 0 • updated 5 months ago by Martin Čech ♦♦ 3.9k
0
votes
0
answers
141
views
0
answers
Diamond insufficient arguments on Galaxy
galaxy alignment rna-seq written 5 months ago by souzatm • 0
0
votes
1
answer
193
views
1
answer
MAF to VCF showing Indels and snps
samtools alignment written 5 months ago by kmurph55 • 0 • updated 5 months ago by Jennifer Hillman Jackson ♦ 22k
2
votes
2
answers
212
views
2
answers
How to save sequence data and analysis results outside of Galaxy
galaxy alignment assembly written 5 months ago by Politz, Samuel M. • 70 • updated 5 months ago by Jennifer Hillman Jackson ♦ 22k
0
votes
1
answer
192
views
1
answer
use bowtie for illumina with phred33?
bowtie alignment rna-seq written 6 months ago by valdirbarth • 0 • updated 6 months ago by Jennifer Hillman Jackson ♦ 22k
1
vote
1
answer
157
views
1
answer
loading Fastq files
galaxy alignment written 6 months ago by federica.isidori • 0 • updated 6 months ago by Martin Čech ♦♦ 3.9k
0
votes
0
answers
160
views
0
answers
Error Using MAFFT
alignment written 6 months ago by joeytabanerjee • 0
0
votes
1
answer
197
views
1
answer
Unable to run job due to a misconfiguration of the Galaxy job running system. Please contact a site administrator.
rna-seq software error alignment written 7 months ago by lhorb • 0 • updated 7 months ago by Jennifer Hillman Jackson ♦ 22k
1
vote
1
answer
197
views
1
answer
Data Managers not containing uploaded data? (hg38 missing)
data manager alignment tool reference genome written 7 months ago by Inquirer • 70 • updated 7 months ago by Jennifer Hillman Jackson ♦ 22k
0
votes
2
answers
287
views
2
answers
NGS: Variant identification at specific positions in an enzyme engineering approach
galaxy variant identification snp ngs alignment written 8 months ago by olivier.rousseau.1 • 0
0
votes
1
answer
221
views
1
answer
Upload Jatropha Reference genome for Bowtie2
samtools galaxy bowtie alignment bwa written 8 months ago by anoopanandmalik • 0 • updated 8 months ago by Jennifer Hillman Jackson ♦ 22k
0
votes
2
answers
277
views
2
answers
Cufflinks analysis remains in que without running
cufflinks galaxy alignment rna-seq written 9 months ago by ctyoung • 0
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