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align.seq mothur error
mothur alignment silva error written 18 days ago by rizkyana.avissa • 0 • updated 18 days ago by Jennifer Hillman Jackson ♦ 25k
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1
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54
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what does unavailable mean?
alignment written 21 days ago by hzhu04 • 10
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1
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104
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1
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RNAseq: RNA STAR ---Mapping to a viral genome
rna-seq alignment viral infection mixed genome written 26 days ago by esundaramoorthy • 0 • updated 25 days ago by Jennifer Hillman Jackson ♦ 25k
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2
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94
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Mapping (with HISAT2 / Bowtie) on custom genomes yields always 0 matches
spliced galaxy rna dna alignment written 6 weeks ago by stoyan.velkov • 10
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76
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How to export the SNPs between whole genome alignments using the command line?
command-line variants mauve snp alignment written 7 weeks ago by ppurkayastha2010 • 30 • updated 7 weeks ago by Jennifer Hillman Jackson ♦ 25k
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1
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88
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Reference Annotation error using HISAT2
rna-seq hisat tophat alignment written 8 weeks ago by ewilli28 • 40 • updated 8 weeks ago by Jennifer Hillman Jackson ♦ 25k
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1
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76
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Issue visualizing RNA-seq HISAT outputs in UCSC Genome Browser
ucsc genome browser rna-seq hisat alignment written 8 weeks ago by Ray_Enke • 0 • updated 8 weeks ago by Jennifer Hillman Jackson ♦ 25k
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1
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74
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genomic regions without reads
alignment written 8 weeks ago by kniazeva • 0 • updated 8 weeks ago by Jennifer Hillman Jackson ♦ 25k
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2
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166
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Single cell RNA seq data set alignment
alignment rna-seq written 9 weeks ago by ailin_leticia.buzzi • 0
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0
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81
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An error while using Interval2MAF1 tool on usegalaxy.org
galaxy help alignment software error written 8 weeks ago by sap940 • 0
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1
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109
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Dot plot between two sequences
alignment assembly written 9 weeks ago by ppurkayastha2010 • 30 • updated 9 weeks ago by Hotz, Hans-Rudolf • 1.8k
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1
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138
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How to align sequences with MAFFT
mafft galaxy alignment input fasta written 11 weeks ago by winklma01 • 0 • updated 10 weeks ago by Jennifer Hillman Jackson ♦ 25k
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1
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221
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Filtering BAM files from HISAT2
bam hisat2 alignment rna-seq written 12 weeks ago by dexter.myrick • 30 • updated 12 weeks ago by Jennifer Hillman Jackson ♦ 25k
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477
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galGal5 reference genome and indexes
indexes genome alignment assembly written 13 months ago by caroline.brossas • 0 • updated 3 months ago by rasou2ba • 0
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111
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MLSA analysis concatenate genes
alignment gene concatenation mlsa analysis written 3 months ago by hopeserepa • 0
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1
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116
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Is it possible to group many MAF files?
maf text-mani cat alignment merge written 3 months ago by mlwright • 30 • updated 3 months ago by Jennifer Hillman Jackson ♦ 25k
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1
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225
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Error when trying to stitch MAF blocks
software error alignment written 4 months ago by mlwright • 30 • updated 4 months ago by Jennifer Hillman Jackson ♦ 25k
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1
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244
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1
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Extract aligned exactly 1 time fron Bowtie2?
samtools bowtie2 galaxy alignment written 5 months ago by star • 0 • updated 5 months ago by Jennifer Hillman Jackson ♦ 25k
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1
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261
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Why gene counts from RNA STAR don't match total uniquely mapped counts
galaxy alignment rna-seq written 5 months ago by daniel.kim • 30 • updated 5 months ago by Devon Ryan • 1.9k
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2
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163
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How to submit jobs to Stampede from Galaxy Main
alignment rna-seq written 5 months ago by xiaohe • 10
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1
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214
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1
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Download Bowtie2 alignment
galaxy bowtie alignment assembly written 5 months ago by a.chembath1 • 0 • updated 5 months ago by Jennifer Hillman Jackson ♦ 25k
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1
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190
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RNA-seq data to check impact of PCR duplicates
htseq rna-seq galaxy alignment featurecounts written 5 months ago by hasanul101 • 0 • updated 5 months ago by Jennifer Hillman Jackson ♦ 25k
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1
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258
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Paired end fastq files
galaxy datasets collections alignment rna-seq written 5 months ago by audrey.mohr • 0 • updated 5 months ago by Jennifer Hillman Jackson ♦ 25k
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1
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185
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1
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Problem with Hisat2
bam hisat2 alignment rna-seq written 5 months ago by rptiluswatson • 0 • updated 5 months ago by Jennifer Hillman Jackson ♦ 25k
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2
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322
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GEO SRA fastq-dump with very low mapping rate (Galaxy)
galaxy alignment rna-seq written 8 months ago by human • 10
0
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1
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161
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1
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Stitch MAF Blocks output mostly empty
alignment written 5 months ago by mlwright • 30
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1
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173
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Variant calling with 5x coverage, human genome
bam samtools alignment snp variant written 6 months ago by Daphnis • 0 • updated 6 months ago by Jennifer Hillman Jackson ♦ 25k
2
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1
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208
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1
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Checking coverage of yeast whole genome sequencing data
yeast alignment star written 6 months ago by skhan • 40 • updated 6 months ago by Jennifer Hillman Jackson ♦ 25k
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2
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358
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Featurecounts' added built-in annotations
rna-seq gene annotation alignment featurecounts written 6 months ago by p.barnett • 50 • updated 6 months ago by Jennifer Hillman Jackson ♦ 25k
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2
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507
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Trying to upload own reference genome to use in Bowtie2 and BWA aligner, having trouble with FTP filezilla
bowtie alignment bwa rna-seq written 6 months ago by hafsa2009 • 0
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1
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481
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Create Circos Builder
assembly circos galaxy visualization alignment written 7 months ago by sarbast.ihsan • 0
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3
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298
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3
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Problem with Align.Seqs
custom galaxy genome alignment fasta written 7 months ago by cjroy • 0
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320
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BAM header using BWA-MEM in galaxy compared with GATK resource bundle (hg38) - deprecated tools in Galaxy
deprecated gatk snp bwa alignment written 7 months ago by Joan Gibert • 20 • updated 7 months ago by Jennifer Hillman Jackson ♦ 25k
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232
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Align.seq metagenomic data
input galaxy mothur align.seq alignment written 7 months ago by balagenotech • 10 • updated 7 months ago by Jennifer Hillman Jackson ♦ 25k
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532
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How to prepare FastQ files for HISAT2
hisat2 rna-seq alignment fastq written 7 months ago by skhan • 40 • updated 7 months ago by Jennifer Hillman Jackson ♦ 25k
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