Showing: alignmentreset
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Reference Annotation error using HISAT2
rna-seq hisat tophat alignment written 6 days ago by ewilli280 • updated 23 hours ago by Jennifer Hillman Jackson25k
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29
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genomic regions without reads
alignment written 6 days ago by kniazeva0 • updated 1 day ago by Jennifer Hillman Jackson25k
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34
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Dot plot between two sequences
alignment assembly written 11 days ago by ppurkayastha201020 • updated 11 days ago by Hotz, Hans-Rudolf1.8k
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70
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1
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How to align sequences with MAFFT
mafft galaxy alignment input fasta written 22 days ago by winklma010 • updated 20 days ago by Jennifer Hillman Jackson25k
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Filtering BAM files from HISAT2
bam hisat2 alignment rna-seq written 29 days ago by dexter.myrick30 • updated 29 days ago by Jennifer Hillman Jackson25k
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388
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1
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galGal5 reference genome and indexes
indexes genome alignment assembly written 11 months ago by caroline.brossas0 • updated 5 weeks ago by rasou2ba0
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56
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0
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2
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1
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71
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Is it possible to group many MAF files?
maf text-mani cat alignment merge written 7 weeks ago by mlwright30 • updated 7 weeks ago by Jennifer Hillman Jackson25k
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137
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Error when trying to stitch MAF blocks
software error alignment written 10 weeks ago by mlwright30 • updated 10 weeks ago by Jennifer Hillman Jackson25k
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125
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Extract aligned exactly 1 time fron Bowtie2?
samtools bowtie2 galaxy alignment written 3 months ago by star0 • updated 3 months ago by Jennifer Hillman Jackson25k
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148
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Why gene counts from RNA STAR don't match total uniquely mapped counts
galaxy alignment rna-seq written 3 months ago by daniel.kim30 • updated 3 months ago by Devon Ryan1.9k
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2
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119
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2
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0
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1
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153
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Download Bowtie2 alignment
galaxy bowtie alignment assembly written 3 months ago by a.chembath10 • updated 3 months ago by Jennifer Hillman Jackson25k
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130
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1
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0
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175
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Paired end fastq files
galaxy datasets collections alignment rna-seq written 3 months ago by audrey.mohr0 • updated 3 months ago by Jennifer Hillman Jackson25k
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126
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Problem with Hisat2
bam hisat2 alignment rna-seq written 3 months ago by rptiluswatson0 • updated 3 months ago by Jennifer Hillman Jackson25k
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0
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113
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129
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Variant calling with 5x coverage, human genome
bam samtools alignment snp variant written 4 months ago by Daphnis0 • updated 4 months ago by Jennifer Hillman Jackson25k
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157
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1
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Checking coverage of yeast whole genome sequencing data
yeast alignment star written 4 months ago by skhan40 • updated 4 months ago by Jennifer Hillman Jackson25k
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3
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239
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Align.seq metagenomic data
input galaxy mothur align.seq alignment written 5 months ago by balagenotech10 • updated 5 months ago by Jennifer Hillman Jackson25k
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302
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1
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How to prepare FastQ files for HISAT2
hisat2 rna-seq alignment fastq written 5 months ago by skhan40 • updated 5 months ago by Jennifer Hillman Jackson25k
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3
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How to download blastn to scaffold from toolshed?
alignment assembly written 2.6 years ago by d.angra50 • updated 6 months ago by B.M.Nicholson0
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369
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1
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how to perform alignment using Hisat2
alignment rna-seq written 6 months ago by Learner 10 • updated 6 months ago by Jennifer Hillman Jackson25k
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194
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1
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HISAT2/TOPHAT alignment to a Rabbit Genome
hisat2 rabbit alignment tophat written 6 months ago by deemergd920 • updated 6 months ago by Jennifer Hillman Jackson25k
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203
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1
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RNA star fails on collection
rna star alignment rna-seq written 6 months ago by Taamslab0 • updated 6 months ago by Jennifer Hillman Jackson25k
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1
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159
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1
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