Showing: snpreset
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9
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3
answers
3.2k
views
6 follow
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getting number of SNPs, insertion/deletion from VCF with VCFfilter
vcf galaxy snp indels vcffilter written 2.4 years ago by lorenasfe50 • updated 20 months ago by chen.randy110
2
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1
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1.2k
views
5 follow
1
answer
6
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3
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1.2k
views
5 follow
3
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bcftools view no longer present?
samtools galaxy snp written 3.8 years ago by abogutz30 • updated 3.2 years ago by Martin Čech ♦♦ 4.8k
4
votes
1
answer
840
views
1
answer
Help with SNP to Gene mapping
galaxy snp written 2.4 years ago by ptdikshi20
3
votes
3
answers
587
views
3
answers
SnpEff output searching for specific genes
galaxy snp rna-seq written 14 months ago by federico.bernuzzi20 • updated 14 months ago by Guy Reeves1.0k
3
votes
4
answers
597
views
4
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VCF combine only showing chromosome 1 in the output
galaxy snp written 13 months ago by drsrideviunni20 • updated 13 months ago by Guy Reeves1.0k
1
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2
answers
361
views
2
answers
I can't find FreeBayes
freebayes snp tool written 10 months ago by skhan40
0
votes
1
answer
1.1k
views
1
answer
Snpeff Tool?
snp snpeff written 6.8 years ago by Laura Elizabeth Spoor20 • updated 6.8 years ago by Dannon Baker3.7k
1
vote
1
answer
3.7k
views
1
answer
Variant Annotation In Galaxy
snp snpeff written 4.5 years ago by garzetti100 • updated 4.5 years ago by Jennifer Hillman Jackson25k
4
votes
3
answers
1.3k
views
3
answers
running of Unified Genotyper encounters error
snp written 3.9 years ago by pes121740 • updated 3.8 years ago by gou.gou121730
4
votes
1
answer
587
views
1
answer
how to filter the "missense_variant"
snp written 2.4 years ago by silarissa10 • updated 2.4 years ago by Jennifer Hillman Jackson25k
6
votes
3
answers
532
views
3
answers
GENE AND CHROMOSOME SEARCHES
snp written 23 months ago by irusk10 • updated 23 months ago by Martin Čech ♦♦ 4.8k
2
votes
2
answers
1.4k
views
2
answers
2
votes
1
answer
525
views
1
answer
snpsift filter fatal error
snp written 14 months ago by sara.mehrabi40
1
vote
1
answer
312
views
1
answer
2
votes
1
answer
232
views
1
answer
SnpEff variant annotation
snpeff galaxy variants snp written 10 weeks ago by hov20 • updated 10 weeks ago by Jennifer Hillman Jackson25k
3
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1
answer
1.4k
views
1
answer
0
votes
1
answer
2.4k
views
1
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rsID from list of chromosome and position
snp written 4.1 years ago by sookwah.yee0 • updated 4.1 years ago by Bjoern Gruening5.1k
0
votes
1
answer
1.6k
views
1
answer
Variant annotation for bacterial genome
snp written 4.1 years ago by aurelie.renvoise10 • updated 4.1 years ago by Bjoern Gruening5.1k
2
votes
2
answers
1.6k
views
2
answers
1
vote
1
answer
620
views
1
answer
Eerror with cloudmap workflow
software error snp written 2.3 years ago by husthwm30 • updated 2.3 years ago by Wolfgang Maier550
1
vote
2
answers
1.5k
views
2
answers
gene names from a vcf annotate file
galaxy snp bwa written 2.2 years ago by 1603.neha70 • updated 2.2 years ago by Jennifer Hillman Jackson25k
0
votes
1
answer
537
views
1
answer
SHARING WORKFLOW-SNP calling on paired end data
snp workflow sharing written 23 months ago by gilazula0 • updated 23 months ago by Bjoern Gruening5.1k
4
votes
2
answers
604
views
2
answers
1
vote
1
answer
576
views
1
answer
Use whole genome bisulfite sequencing to find DNA mutations
snp bisulfite sequencing dna written 20 months ago by segelmichael0 • updated 20 months ago by Devon Ryan1.9k
4
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2
answers
958
views
2
answers
2
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2
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1.1k
views
2
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SNP Check for homozygous and heterozygous
galaxy snp written 20 months ago by enginyol0 • updated 20 months ago by Guy Reeves1.0k
1
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2
answers
1.6k
views
2
answers
Filtering Variants using Snpsift filter and SnpEff
galaxy snp written 19 months ago by braveen.joseph20 • updated 19 months ago by Guy Reeves1.0k
2
votes
1
answer
866
views
1
answer
Bacterial Sequence for Variant Analysis
snp rna-seq written 17 months ago by ppurkayastha201020 • updated 17 months ago by m.bernt20
2
votes
1
answer
489
views
1
answer
How to filter SNP and Indel data
variant analysis snp indels written 16 months ago by ppurkayastha201020 • updated 16 months ago by Guy Reeves1.0k
0
votes
3
answers
605
views
3
answers
Error message after running FreeBayes
rna-seq galaxy software error snp written 16 months ago by federico.bernuzzi20 • updated 16 months ago by Anton Nekrutenko1.7k
1
vote
1
answer
464
views
1
answer
using snpEff via galaxy
galaxy snp written 16 months ago by mr.donmez.emre0 • updated 16 months ago by Martin Čech ♦♦ 4.8k
1
vote
2
answers
448
views
2
answers
SNPs associated with a gene
snp written 14 months ago by sara.mehrabi40 • updated 14 months ago by Guy Reeves1.0k
1
vote
1
answer
936
views
1
answer
Plotting Density Of Snps On Chromosomes
chromosomes snp written 13 months ago by sara.mehrabi40 • updated 13 months ago by Guy Reeves1.0k
2
votes
1
answer
414
views
1
answer
DBSNP, Variant Caller
snp written 13 months ago by subhikshananda10 • updated 13 months ago by Guy Reeves1.0k
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