Showing: rna-seqreset
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3
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1
answer
2.3k
views
10 follow
1
answer
Using DESeq2 inside Galaxy
deseq2 galaxy rna-seq written 19 months ago by marcelops20 • updated 19 months ago by Bjoern Gruening4.7k
4
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4
answers
1.5k
views
8 follow
4
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Disk quota at 100% when I believe it should be less than 50%
galaxy software error rna-seq written 2.4 years ago by Eric A. Wold0 • updated 13 months ago by fukunaga10
0
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1
answer
1.2k
views
7 follow
1
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Error Running Cufflinks On Galaxy
cufflinks bowtie alignment rna-seq written 6.4 years ago by David Robinson10 • updated 6.4 years ago by Jennifer Hillman Jackson23k
10
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4
answers
1.2k
views
7 follow
4
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cufflinks-job submission failed
galaxy cufflinks rna-seq written 2.6 years ago by raj_26292020 • updated 2.6 years ago by carlos20
9
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6
answers
786
views
7 follow
6
answers
TopHat tool missing?
usegalaxy.org hisat tophat rna-seq written 4 months ago by johanvn10 • updated 4 months ago by franklin_moreno0
5
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1
answer
1.3k
views
6 follow
1
answer
Error with cuffdiff
cuffdiff software error rna-seq written 2.4 years ago by drbrown20 • updated 2.4 years ago by Martin Čech ♦♦ 4.1k
6
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0
answers
377
views
6 follow
0
answers
TopHat not processing RNA-seq FASTQ file
rna-seq written 16 months ago by ang3x20 • updated 16 months ago by Jennifer Hillman Jackson23k
0
votes
1
answer
1.7k
views
5 follow
1
answer
Gene Name In Cufflink/Compare/Diff
cuffdiff rna-seq written 6.7 years ago by Matteo Bovolenta10 • updated 6.7 years ago by vasu punj360
7
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1
answer
4.5k
views
5 follow
1
answer
3
votes
3
answers
5.7k
views
5 follow
3
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Unzip files on Galaxy
galaxy rna-seq written 3.3 years ago by smthorpe10 • updated 19 months ago by Greg Von Kuster810
7
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3
answers
1.2k
views
5 follow
3
answers
miRDeep in lastest version of Galaxy
rna-seq written 3.3 years ago by quintanamaster20 • updated 2.7 years ago by Bjoern Gruening4.7k
2
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1
answer
3.7k
views
5 follow
1
answer
Building Bowtie index, failed
rna-seq alignment tophat gff written 2.8 years ago by jingshuowang10 • updated 2.8 years ago by Bjoern Gruening4.7k
2
votes
1
answer
360
views
5 follow
1
answer
Cummerbund visualization of expression plot
rna-seq written 7 months ago by clarkd30 • updated 5 months ago by roxy.zhang0
3
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6
answers
244
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5 follow
6
answers
Jobs as gray history
rna-seq written 6 months ago by bioraihan40 • updated 5 months ago by Jennifer Hillman Jackson23k
3
votes
1
answer
314
views
5 follow
1
answer
Phenotype data for Ballgown tool
ballgown galaxy rna-seq written 4 months ago by tamrin.chowdhury40 • updated 4 months ago by Jennifer Hillman Jackson23k
2
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2
answers
81
views
5 follow
2
answers
1
vote
2
answers
1.5k
views
2
answers
Inconsistency Between Cufflinks And Cuffdiff. This Is Killing Me.
cufflinks rna-seq written 5.4 years ago by Jia Meng10 • updated 4 months ago by vm.higareda0
0
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1
answer
682
views
1
answer
Inconsistent Cuffdiff Output-Corrected Question
cufflinks rna-seq written 5.2 years ago by i b330 • updated 4 months ago by vm.higareda0
7
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1
answer
2.7k
views
1
answer
How do I obtain uniquely mappable reads from bowtie on galaxy?
rna-seq bowtie solid written 3.5 years ago by Jason30 • updated 3.5 years ago by Bjoern Gruening4.7k
2
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2
answers
2.5k
views
2
answers
How to run HTseq on the public galaxy platform?
htseq galaxy rna-seq written 3.5 years ago by Yanxiang Shi20 • updated 18 months ago by Jennifer Hillman Jackson23k
2
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1
answer
1.7k
views
1
answer
Filter SAM or BAM
filter galaxy rna-seq written 3.5 years ago by hsuehyuanc0 • updated 3.5 years ago by Jennifer Hillman Jackson23k
13
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2
answers
3.9k
views
2
answers
fastq files are't recognized by tools
rna-seq written 3.5 years ago by markus.wolfien50 • updated 2.9 years ago by dtabed0
4
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1
answer
1.9k
views
1
answer
1
vote
1
answer
1.1k
views
1
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Running TopHat locally
local tophat rna-seq written 3.3 years ago by Suzanne Gomes120
3
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1
answer
1.3k
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1
answer
2
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2
answers
2.6k
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2
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Cuffdiff Error - sort order of reads in BAMs must be the same
cuffdiff rna-seq written 2.8 years ago by francis.gandhi20 • updated 8 months ago by takshan10
0
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3
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510
views
3
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3
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0
answers
583
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0
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-nan in Cuffdiff run
rna-seq written 22 months ago by Cory Dunn40 • updated 21 months ago by Jennifer Hillman Jackson23k
2
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1
answer
467
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1
answer
TopHat Build in genomes
galaxy alignment tophat rna-seq written 18 months ago by newyasso0 • updated 18 months ago by christophe.habib330
1
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1
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573
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1
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significant genes not shown in the scatter and volcano plots
rna-seq written 18 months ago by brarp061910 • updated 4 months ago by akilabioinfo0
1
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2
answers
439
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2
answers
Error message in Tophat
rna-seq written 17 months ago by wcheng10
5
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3
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400
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3
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1
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1
answer
382
views
1
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Tophat errors with alignment summary and insertions data
alignment tophat rna-seq written 14 months ago by darsha_710 • updated 14 months ago by Jennifer Hillman Jackson23k
3
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1
answer
516
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1
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4
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1
answer
387
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1
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cuffdiff conditions related question
rna-seq written 14 months ago by xusiyujune10 • updated 14 months ago by Mo Heydarian790
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