Showing: rna-seqreset
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3
votes
1
answer
1.8k
views
9 follow
1
answer
Using DESeq2 inside Galaxy
deseq2 galaxy rna-seq written 16 months ago by marcelops20 • updated 15 months ago by Bjoern Gruening4.6k
4
votes
4
answers
1.4k
views
8 follow
4
answers
Disk quota at 100% when I believe it should be less than 50%
galaxy software error rna-seq written 2.1 years ago by Eric A. Wold0 • updated 10 months ago by fukunaga10
0
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1
answer
1.1k
views
7 follow
1
answer
Error Running Cufflinks On Galaxy
cufflinks bowtie alignment rna-seq written 6.1 years ago by David Robinson10 • updated 6.1 years ago by Jennifer Hillman Jackson22k
10
votes
4
answers
1.1k
views
7 follow
4
answers
cufflinks-job submission failed
galaxy cufflinks rna-seq written 2.3 years ago by raj_26292020 • updated 2.3 years ago by carlos0
5
votes
1
answer
1.1k
views
6 follow
1
answer
Error with cuffdiff
cuffdiff software error rna-seq written 2.1 years ago by drbrown20 • updated 2.1 years ago by Martin Čech ♦♦ 3.9k
6
votes
0
answers
308
views
6 follow
0
answers
TopHat not processing RNA-seq FASTQ file
rna-seq written 12 months ago by ang3x20 • updated 12 months ago by Jennifer Hillman Jackson22k
9
votes
6
answers
460
views
6 follow
6
answers
TopHat tool missing?
usegalaxy.org hisat tophat rna-seq written 26 days ago by johanvn10 • updated 18 days ago by franklin_moreno0
0
votes
1
answer
1.5k
views
5 follow
1
answer
Gene Name In Cufflink/Compare/Diff
cuffdiff rna-seq written 6.4 years ago by Matteo Bovolenta10 • updated 6.4 years ago by vasu punj360
7
votes
1
answer
4.2k
views
5 follow
1
answer
3
votes
3
answers
5.1k
views
5 follow
3
answers
Unzip files on Galaxy
galaxy rna-seq written 3.0 years ago by smthorpe10 • updated 15 months ago by Greg Von Kuster810
7
votes
3
answers
1.1k
views
5 follow
3
answers
miRDeep in lastest version of Galaxy
rna-seq written 3.0 years ago by quintanamaster20 • updated 2.4 years ago by Bjoern Gruening4.6k
2
votes
1
answer
3.4k
views
5 follow
1
answer
Building Bowtie index, failed
rna-seq alignment tophat gff written 2.5 years ago by jingshuowang10 • updated 2.5 years ago by Bjoern Gruening4.6k
2
votes
1
answer
232
views
5 follow
1
answer
Cummerbund visualization of expression plot
rna-seq written 4 months ago by clarkd30 • updated 5 weeks ago by roxy.zhang0
3
votes
6
answers
176
views
5 follow
6
answers
Jobs as gray history
rna-seq written 10 weeks ago by bioraihan40 • updated 5 weeks ago by Jennifer Hillman Jackson22k
1
vote
2
answers
1.4k
views
2
answers
Inconsistency Between Cufflinks And Cuffdiff. This Is Killing Me.
cufflinks rna-seq written 5.1 years ago by Jia Meng10 • updated 25 days ago by vm.higareda0
0
votes
1
answer
587
views
1
answer
Inconsistent Cuffdiff Output-Corrected Question
cufflinks rna-seq written 4.9 years ago by i b330 • updated 25 days ago by vm.higareda0
7
votes
1
answer
2.5k
views
1
answer
How do I obtain uniquely mappable reads from bowtie on galaxy?
rna-seq bowtie solid written 3.2 years ago by Jason30 • updated 3.2 years ago by Bjoern Gruening4.6k
2
votes
2
answers
2.4k
views
2
answers
How to run HTseq on the public galaxy platform?
htseq galaxy rna-seq written 3.2 years ago by Yanxiang Shi20 • updated 14 months ago by Jennifer Hillman Jackson22k
2
votes
1
answer
1.5k
views
1
answer
Filter SAM or BAM
filter galaxy rna-seq written 3.2 years ago by hsuehyuanc0 • updated 3.2 years ago by Jennifer Hillman Jackson22k
13
votes
2
answers
3.6k
views
2
answers
fastq files are't recognized by tools
rna-seq written 3.1 years ago by markus.wolfien50 • updated 2.6 years ago by dtabed0
4
votes
1
answer
1.7k
views
1
answer
1
vote
1
answer
996
views
1
answer
Running TopHat locally
local tophat rna-seq written 3.0 years ago by Suzanne Gomes120
3
votes
1
answer
1.2k
views
1
answer
2
votes
2
answers
2.3k
views
2
answers
Cuffdiff Error - sort order of reads in BAMs must be the same
cuffdiff rna-seq written 2.4 years ago by francis.gandhi20 • updated 4 months ago by takshan10
0
votes
3
answers
424
views
3
answers
3
votes
0
answers
494
views
0
answers
-nan in Cuffdiff run
rna-seq written 18 months ago by Cory Dunn40 • updated 18 months ago by Jennifer Hillman Jackson22k
2
votes
1
answer
363
views
1
answer
TopHat Build in genomes
galaxy alignment tophat rna-seq written 14 months ago by newyasso0 • updated 14 months ago by christophe.habib330
1
vote
1
answer
459
views
1
answer
significant genes not shown in the scatter and volcano plots
rna-seq written 14 months ago by brarp061910 • updated 24 days ago by akilabioinfo0
1
vote
2
answers
340
views
2
answers
Error message in Tophat
rna-seq written 13 months ago by wcheng10
5
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3
answers
310
views
3
answers
1
vote
1
answer
287
views
1
answer
Tophat errors with alignment summary and insertions data
alignment tophat rna-seq written 10 months ago by darsha_710 • updated 10 months ago by Jennifer Hillman Jackson22k
3
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1
answer
375
views
1
answer
4
votes
1
answer
299
views
1
answer
cuffdiff conditions related question
rna-seq written 10 months ago by xusiyujune10 • updated 10 months ago by Mo Heydarian690
3
votes
4
answers
453
views
4
answers
How to create GFF file for HT seq
bam rna-seq written 10 months ago by shraddha.adamane10 • updated 9 months ago by fate.gh10
2
votes
1
answer
241
views
1
answer
MACE (Massive analysis of cDNA ends)
galaxy rna-seq written 8 months ago by Philippe10 • updated 8 months ago by Mo Heydarian690
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