Showing: rna-seqreset
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3
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1
answer
2.0k
views
9 follow
1
answer
Using DESeq2 inside Galaxy
deseq2 galaxy rna-seq written 17 months ago by marcelops20 • updated 17 months ago by Bjoern Gruening4.7k
4
votes
4
answers
1.4k
views
8 follow
4
answers
Disk quota at 100% when I believe it should be less than 50%
galaxy software error rna-seq written 2.3 years ago by Eric A. Wold0 • updated 11 months ago by fukunaga10
0
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1
answer
1.1k
views
7 follow
1
answer
Error Running Cufflinks On Galaxy
cufflinks bowtie alignment rna-seq written 6.2 years ago by David Robinson10 • updated 6.2 years ago by Jennifer Hillman Jackson22k
10
votes
4
answers
1.2k
views
7 follow
4
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cufflinks-job submission failed
galaxy cufflinks rna-seq written 2.5 years ago by raj_26292020 • updated 2.4 years ago by carlos10
9
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6
answers
636
views
7 follow
6
answers
TopHat tool missing?
usegalaxy.org hisat tophat rna-seq written 11 weeks ago by johanvn10 • updated 10 weeks ago by franklin_moreno0
5
votes
1
answer
1.2k
views
6 follow
1
answer
Error with cuffdiff
cuffdiff software error rna-seq written 2.2 years ago by drbrown20 • updated 2.2 years ago by Martin Čech ♦♦ 4.0k
6
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0
answers
341
views
6 follow
0
answers
TopHat not processing RNA-seq FASTQ file
rna-seq written 13 months ago by ang3x20 • updated 13 months ago by Jennifer Hillman Jackson22k
0
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1
answer
1.6k
views
5 follow
1
answer
Gene Name In Cufflink/Compare/Diff
cuffdiff rna-seq written 6.6 years ago by Matteo Bovolenta10 • updated 6.6 years ago by vasu punj360
7
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1
answer
4.3k
views
5 follow
1
answer
3
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3
answers
5.4k
views
5 follow
3
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Unzip files on Galaxy
galaxy rna-seq written 3.2 years ago by smthorpe10 • updated 17 months ago by Greg Von Kuster810
7
votes
3
answers
1.1k
views
5 follow
3
answers
miRDeep in lastest version of Galaxy
rna-seq written 3.1 years ago by quintanamaster20 • updated 2.6 years ago by Bjoern Gruening4.7k
2
votes
1
answer
3.5k
views
5 follow
1
answer
Building Bowtie index, failed
rna-seq alignment tophat gff written 2.6 years ago by jingshuowang10 • updated 2.6 years ago by Bjoern Gruening4.7k
2
votes
1
answer
294
views
5 follow
1
answer
Cummerbund visualization of expression plot
rna-seq written 5 months ago by clarkd30 • updated 3 months ago by roxy.zhang0
3
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6
answers
210
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5 follow
6
answers
Jobs as gray history
rna-seq written 4 months ago by bioraihan40 • updated 12 weeks ago by Jennifer Hillman Jackson22k
1
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2
answers
1.4k
views
2
answers
Inconsistency Between Cufflinks And Cuffdiff. This Is Killing Me.
cufflinks rna-seq written 5.2 years ago by Jia Meng10 • updated 10 weeks ago by vm.higareda0
0
votes
1
answer
629
views
1
answer
Inconsistent Cuffdiff Output-Corrected Question
cufflinks rna-seq written 5.0 years ago by i b330 • updated 10 weeks ago by vm.higareda0
7
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1
answer
2.6k
views
1
answer
How do I obtain uniquely mappable reads from bowtie on galaxy?
rna-seq bowtie solid written 3.3 years ago by Jason30 • updated 3.3 years ago by Bjoern Gruening4.7k
2
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2
answers
2.5k
views
2
answers
How to run HTseq on the public galaxy platform?
htseq galaxy rna-seq written 3.3 years ago by Yanxiang Shi20 • updated 16 months ago by Jennifer Hillman Jackson22k
2
votes
1
answer
1.6k
views
1
answer
Filter SAM or BAM
filter galaxy rna-seq written 3.3 years ago by hsuehyuanc0 • updated 3.3 years ago by Jennifer Hillman Jackson22k
13
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2
answers
3.7k
views
2
answers
fastq files are't recognized by tools
rna-seq written 3.3 years ago by markus.wolfien50 • updated 2.7 years ago by dtabed0
4
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1
answer
1.8k
views
1
answer
1
vote
1
answer
1.0k
views
1
answer
Running TopHat locally
local tophat rna-seq written 3.1 years ago by Suzanne Gomes120
3
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1
answer
1.2k
views
1
answer
2
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2
answers
2.4k
views
2
answers
Cuffdiff Error - sort order of reads in BAMs must be the same
cuffdiff rna-seq written 2.6 years ago by francis.gandhi20 • updated 6 months ago by takshan10
0
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3
answers
469
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3
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3
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0
answers
538
views
0
answers
-nan in Cuffdiff run
rna-seq written 20 months ago by Cory Dunn40 • updated 19 months ago by Jennifer Hillman Jackson22k
2
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1
answer
409
views
1
answer
TopHat Build in genomes
galaxy alignment tophat rna-seq written 16 months ago by newyasso0 • updated 16 months ago by christophe.habib330
1
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1
answer
509
views
1
answer
significant genes not shown in the scatter and volcano plots
rna-seq written 16 months ago by brarp061910 • updated 10 weeks ago by akilabioinfo0
1
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2
answers
380
views
2
answers
Error message in Tophat
rna-seq written 15 months ago by wcheng10
5
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3
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352
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3
answers
1
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1
answer
329
views
1
answer
Tophat errors with alignment summary and insertions data
alignment tophat rna-seq written 12 months ago by darsha_710 • updated 12 months ago by Jennifer Hillman Jackson22k
3
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1
answer
443
views
1
answer
4
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1
answer
326
views
1
answer
cuffdiff conditions related question
rna-seq written 12 months ago by xusiyujune10 • updated 12 months ago by Mo Heydarian790
3
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4
answers
547
views
4
answers
How to create GFF file for HT seq
bam rna-seq written 12 months ago by shraddha.adamane10 • updated 10 months ago by fate.gh10
2
votes
1
answer
291
views
1
answer
MACE (Massive analysis of cDNA ends)
galaxy rna-seq written 10 months ago by Philippe10 • updated 10 months ago by Mo Heydarian790
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