Showing: rna-seqreset
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3
votes
1
answer
1.7k
views
9 follow
1
answer
Using DESeq2 inside Galaxy
deseq2 galaxy rna-seq written 14 months ago by marcelops20 • updated 14 months ago by Bjoern Gruening4.6k
4
votes
4
answers
1.3k
views
8 follow
4
answers
Disk quota at 100% when I believe it should be less than 50%
galaxy software error rna-seq written 2.0 years ago by Eric A. Wold0 • updated 9 months ago by fukunaga10
0
votes
1
answer
1.0k
views
7 follow
1
answer
Error Running Cufflinks On Galaxy
cufflinks bowtie alignment rna-seq written 6.0 years ago by David Robinson10 • updated 6.0 years ago by Jennifer Hillman Jackson22k
10
votes
4
answers
1.1k
views
7 follow
4
answers
cufflinks-job submission failed
galaxy cufflinks rna-seq written 2.2 years ago by raj_26292020 • updated 2.2 years ago by carlos0
5
votes
1
answer
1.0k
views
6 follow
1
answer
Error with cuffdiff
cuffdiff software error rna-seq written 24 months ago by drbrown20 • updated 24 months ago by Martin Čech ♦♦ 3.9k
6
votes
0
answers
280
views
6 follow
0
answers
TopHat not processing RNA-seq FASTQ file
rna-seq written 11 months ago by ang3x20 • updated 11 months ago by Jennifer Hillman Jackson22k
0
votes
1
answer
1.5k
views
5 follow
1
answer
Gene Name In Cufflink/Compare/Diff
cuffdiff rna-seq written 6.3 years ago by Matteo Bovolenta10 • updated 6.3 years ago by vasu punj360
7
votes
1
answer
4.1k
views
5 follow
1
answer
3
votes
3
answers
4.9k
views
5 follow
3
answers
Unzip files on Galaxy
galaxy rna-seq written 2.9 years ago by smthorpe10 • updated 14 months ago by Greg Von Kuster810
7
votes
3
answers
1.1k
views
5 follow
3
answers
miRDeep in lastest version of Galaxy
rna-seq written 2.9 years ago by quintanamaster20 • updated 2.3 years ago by Bjoern Gruening4.6k
2
votes
1
answer
3.3k
views
5 follow
1
answer
Building Bowtie index, failed
rna-seq alignment tophat gff written 2.4 years ago by jingshuowang10 • updated 2.4 years ago by Bjoern Gruening4.6k
2
votes
1
answer
175
views
5 follow
1
answer
Cummerbund visualization of expression plot
rna-seq written 12 weeks ago by clarkd30 • updated 6 days ago by roxy.zhang0
3
votes
6
answers
147
views
5 follow
6
answers
Jobs as gray history
rna-seq written 5 weeks ago by bioraihan40 • updated 1 day ago by Jennifer Hillman Jackson22k
7
votes
1
answer
2.5k
views
1
answer
How do I obtain uniquely mappable reads from bowtie on galaxy?
rna-seq bowtie solid written 3.1 years ago by Jason30 • updated 3.1 years ago by Bjoern Gruening4.6k
2
votes
2
answers
2.3k
views
2
answers
How to run HTseq on the public galaxy platform?
htseq galaxy rna-seq written 3.1 years ago by Yanxiang Shi20 • updated 13 months ago by Jennifer Hillman Jackson22k
2
votes
1
answer
1.5k
views
1
answer
Filter SAM or BAM
filter galaxy rna-seq written 3.1 years ago by hsuehyuanc0 • updated 3.1 years ago by Jennifer Hillman Jackson22k
13
votes
2
answers
3.5k
views
2
answers
fastq files are't recognized by tools
rna-seq written 3.1 years ago by markus.wolfien50 • updated 2.5 years ago by dtabed0
4
votes
1
answer
1.7k
views
1
answer
1
vote
1
answer
954
views
1
answer
Running TopHat locally
local tophat rna-seq written 2.9 years ago by Suzanne Gomes120
3
votes
1
answer
1.1k
views
1
answer
2
votes
2
answers
2.2k
views
2
answers
Cuffdiff Error - sort order of reads in BAMs must be the same
cuffdiff rna-seq written 2.4 years ago by francis.gandhi20 • updated 3 months ago by takshan10
0
votes
3
answers
395
views
3
answers
3
votes
0
answers
457
views
0
answers
-nan in Cuffdiff run
rna-seq written 17 months ago by Cory Dunn40 • updated 16 months ago by Jennifer Hillman Jackson22k
2
votes
1
answer
334
views
1
answer
TopHat Build in genomes
galaxy alignment tophat rna-seq written 13 months ago by newyasso0 • updated 13 months ago by christophe.habib330
1
vote
2
answers
306
views
2
answers
Error message in Tophat
rna-seq written 12 months ago by wcheng10
5
votes
3
answers
275
views
3
answers
3
votes
0
answers
335
views
0
answers
Cuffdiff crashing suddenly
cuffdiff chip-seq rna-seq written 9 months ago by VY120
1
vote
1
answer
243
views
1
answer
Tophat errors with alignment summary and insertions data
alignment tophat rna-seq written 9 months ago by darsha_710 • updated 9 months ago by Jennifer Hillman Jackson22k
3
votes
1
answer
338
views
1
answer
4
votes
1
answer
273
views
1
answer
cuffdiff conditions related question
rna-seq written 9 months ago by xusiyujune10 • updated 9 months ago by Mo Heydarian600
3
votes
4
answers
399
views
4
answers
How to create GFF file for HT seq
bam rna-seq written 9 months ago by shraddha.adamane10 • updated 7 months ago by fate.gh10
2
votes
1
answer
204
views
1
answer
MACE (Massive analysis of cDNA ends)
galaxy rna-seq written 7 months ago by Philippe10 • updated 7 months ago by Mo Heydarian600
3
votes
1
answer
164
views
1
answer
splitter not working
fastq splitter rna-seq usegalaxy.org tool error written 6 months ago by souradeep.mis40 • updated 5 months ago by Jennifer Hillman Jackson22k
5
votes
2
answers
139
views
2
answers
0
votes
1
answer
96
views
1
answer
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