Showing: rna-seqreset
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3
votes
1
answer
2.3k
views
10 follow
1
answer
Using DESeq2 inside Galaxy
deseq2 galaxy rna-seq written 19 months ago by marcelops20 • updated 19 months ago by Bjoern Gruening4.7k
2
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1
answer
3.7k
views
1
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Cuffcompare Or Cuffmerge
cufflinks cuffmerge rna-seq written 5.5 years ago by 杨继文210 • updated 5.5 years ago by ericliaowei@gmail.com70
13
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2
answers
3.9k
views
2
answers
fastq files are't recognized by tools
rna-seq written 3.5 years ago by markus.wolfien50 • updated 2.9 years ago by dtabed0
7
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1
answer
4.5k
views
5 follow
1
answer
3
votes
3
answers
5.7k
views
5 follow
3
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Unzip files on Galaxy
galaxy rna-seq written 3.3 years ago by smthorpe10 • updated 19 months ago by Greg Von Kuster810
7
votes
3
answers
1.2k
views
5 follow
3
answers
miRDeep in lastest version of Galaxy
rna-seq written 3.3 years ago by quintanamaster20 • updated 2.7 years ago by Bjoern Gruening4.7k
3
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1
answer
1.3k
views
1
answer
1
vote
1
answer
1.1k
views
1
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Cuffquant and cuffnorm
tuxedo ngs rna-seq written 3.1 years ago by hojjat_naderi0 • updated 3.1 years ago by Jennifer Hillman Jackson23k
2
votes
1
answer
3.7k
views
5 follow
1
answer
Building Bowtie index, failed
rna-seq alignment tophat gff written 2.8 years ago by jingshuowang10 • updated 2.8 years ago by Bjoern Gruening4.7k
1
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1
answer
1.5k
views
1
answer
Galaxy RSEM error
rna-seq written 2.8 years ago by h7.jung10 • updated 2.7 years ago by Jennifer Hillman Jackson23k
2
votes
2
answers
2.6k
views
2
answers
Cuffdiff Error - sort order of reads in BAMs must be the same
cuffdiff rna-seq written 2.8 years ago by francis.gandhi20 • updated 8 months ago by takshan10
5
votes
1
answer
1.3k
views
6 follow
1
answer
Error with cuffdiff
cuffdiff software error rna-seq written 2.4 years ago by drbrown20 • updated 2.4 years ago by Martin Čech ♦♦ 4.1k
2
votes
7
answers
1.8k
views
7
answers
1
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0
answers
506
views
0
answers
Error for TopHat
software error tophat rna-seq written 2.0 years ago by ahmetcingoz10 • updated 2.0 years ago by Jennifer Hillman Jackson23k
3
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0
answers
583
views
0
answers
-nan in Cuffdiff run
rna-seq written 22 months ago by Cory Dunn40 • updated 21 months ago by Jennifer Hillman Jackson23k
2
votes
2
answers
558
views
2
answers
Getting RT stops
rt mapping bowtie alignment rna-seq written 21 months ago by mabdelsa10
4
votes
1
answer
404
views
1
answer
upload data to galaxy from the CGhub
galaxy rna-seq written 21 months ago by heming_wang20 • updated 21 months ago by Jennifer Hillman Jackson23k
1
vote
2
answers
474
views
2
answers
1
vote
0
answers
392
views
0
answers
1
vote
1
answer
573
views
1
answer
significant genes not shown in the scatter and volcano plots
rna-seq written 18 months ago by brarp061910 • updated 4 months ago by akilabioinfo0
1
vote
1
answer
767
views
1
answer
Tophat2 index problem
tophat rna-seq written 17 months ago by yasser.morsy10
1
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0
answers
397
views
0
answers
1
vote
1
answer
461
views
1
answer
preparing input for cummerbund
software error rna-seq written 17 months ago by owjih10 • updated 17 months ago by Jennifer Hillman Jackson23k
1
vote
2
answers
439
views
2
answers
Error message in Tophat
rna-seq written 17 months ago by wcheng10
3
votes
1
answer
722
views
1
answer
Stranded vs unstranded cufflinks
rna-seq cufflinks strand nexteraxt written 16 months ago by VY120 • updated 14 months ago by Jennifer Hillman Jackson23k
3
votes
1
answer
537
views
1
answer
HTseq runs fail
galaxy rna-seq written 16 months ago by gupta20 • updated 16 months ago by Jennifer Hillman Jackson23k
1
vote
1
answer
425
views
1
answer
htseq-count no hits
rna-seq written 16 months ago by VY120 • updated 16 months ago by Jennifer Hillman Jackson23k
6
votes
0
answers
377
views
6 follow
0
answers
TopHat not processing RNA-seq FASTQ file
rna-seq written 16 months ago by ang3x20 • updated 16 months ago by Jennifer Hillman Jackson23k
1
vote
1
answer
382
views
1
answer
Tophat errors with alignment summary and insertions data
alignment tophat rna-seq written 14 months ago by darsha_710 • updated 14 months ago by Jennifer Hillman Jackson23k
3
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1
answer
516
views
1
answer
1
vote
1
answer
276
views
1
answer
After loading up RNAseq data, what to do next?
rna-seq written 14 months ago by shuo.li10 • updated 14 months ago by Jennifer Hillman Jackson23k
1
vote
1
answer
661
views
1
answer
TopHat - set metadata manually or retry auto-detection
tophat rna-seq written 14 months ago by avoltz30 • updated 14 months ago by Jennifer Hillman Jackson23k
4
votes
1
answer
387
views
1
answer
cuffdiff conditions related question
rna-seq written 14 months ago by xusiyujune10 • updated 14 months ago by Mo Heydarian790
5
votes
1
answer
326
views
1
answer
HISAT Error on local Galaxy
local hisat rna-seq written 12 months ago by ChickenRNA50
2
votes
1
answer
340
views
1
answer
MACE (Massive analysis of cDNA ends)
galaxy rna-seq written 12 months ago by Philippe10 • updated 12 months ago by Mo Heydarian790
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