Showing: rna-seqreset
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3
votes
1
answer
1.7k
views
9 follow
1
answer
Using DESeq2 inside Galaxy
deseq2 galaxy rna-seq written 14 months ago by marcelops20 • updated 14 months ago by Bjoern Gruening4.6k
2
votes
1
answer
3.2k
views
1
answer
Cuffcompare Or Cuffmerge
cufflinks cuffmerge rna-seq written 5.1 years ago by 杨继文210 • updated 5.1 years ago by ericliaowei@gmail.com70
13
votes
2
answers
3.5k
views
2
answers
fastq files are't recognized by tools
rna-seq written 3.1 years ago by markus.wolfien50 • updated 2.5 years ago by dtabed0
7
votes
1
answer
4.1k
views
5 follow
1
answer
3
votes
3
answers
4.9k
views
5 follow
3
answers
Unzip files on Galaxy
galaxy rna-seq written 2.9 years ago by smthorpe10 • updated 14 months ago by Greg Von Kuster810
7
votes
3
answers
1.1k
views
5 follow
3
answers
miRDeep in lastest version of Galaxy
rna-seq written 2.9 years ago by quintanamaster20 • updated 2.3 years ago by Bjoern Gruening4.6k
3
votes
1
answer
1.1k
views
1
answer
1
vote
1
answer
915
views
1
answer
Cuffquant and cuffnorm
tuxedo ngs rna-seq written 2.7 years ago by hojjat_naderi0 • updated 2.7 years ago by Jennifer Hillman Jackson22k
2
votes
1
answer
3.3k
views
5 follow
1
answer
Building Bowtie index, failed
rna-seq alignment tophat gff written 2.4 years ago by jingshuowang10 • updated 2.4 years ago by Bjoern Gruening4.6k
1
vote
1
answer
1.3k
views
1
answer
Galaxy RSEM error
rna-seq written 2.4 years ago by h7.jung10 • updated 2.3 years ago by Jennifer Hillman Jackson22k
2
votes
2
answers
2.2k
views
2
answers
Cuffdiff Error - sort order of reads in BAMs must be the same
cuffdiff rna-seq written 2.4 years ago by francis.gandhi20 • updated 3 months ago by takshan10
5
votes
1
answer
1.0k
views
6 follow
1
answer
Error with cuffdiff
cuffdiff software error rna-seq written 24 months ago by drbrown20 • updated 24 months ago by Martin Čech ♦♦ 3.9k
2
votes
7
answers
1.5k
views
7
answers
1
vote
0
answers
403
views
0
answers
Error for TopHat
software error tophat rna-seq written 19 months ago by ahmetcingoz10 • updated 19 months ago by Jennifer Hillman Jackson22k
3
votes
0
answers
457
views
0
answers
-nan in Cuffdiff run
rna-seq written 17 months ago by Cory Dunn40 • updated 16 months ago by Jennifer Hillman Jackson22k
2
votes
2
answers
420
views
2
answers
Getting RT stops
rt mapping bowtie alignment rna-seq written 16 months ago by mabdelsa10
4
votes
1
answer
313
views
1
answer
upload data to galaxy from the CGhub
galaxy rna-seq written 16 months ago by heming_wang20 • updated 16 months ago by Jennifer Hillman Jackson22k
1
vote
2
answers
341
views
2
answers
1
vote
0
answers
289
views
0
answers
1
vote
0
answers
397
views
0
answers
1
vote
1
answer
486
views
1
answer
Tophat2 index problem
tophat rna-seq written 12 months ago by yasser.morsy10
1
vote
0
answers
272
views
0
answers
1
vote
1
answer
308
views
1
answer
preparing input for cummerbund
software error rna-seq written 12 months ago by owjih10 • updated 12 months ago by Jennifer Hillman Jackson22k
1
vote
2
answers
305
views
2
answers
Error message in Tophat
rna-seq written 12 months ago by wcheng10
3
votes
1
answer
535
views
1
answer
Stranded vs unstranded cufflinks
rna-seq cufflinks strand nexteraxt written 11 months ago by VY120 • updated 9 months ago by Jennifer Hillman Jackson22k
3
votes
1
answer
370
views
1
answer
HTseq runs fail
galaxy rna-seq written 11 months ago by gupta20 • updated 11 months ago by Jennifer Hillman Jackson22k
6
votes
0
answers
280
views
6 follow
0
answers
TopHat not processing RNA-seq FASTQ file
rna-seq written 11 months ago by ang3x20 • updated 11 months ago by Jennifer Hillman Jackson22k
3
votes
0
answers
335
views
0
answers
Cuffdiff crashing suddenly
cuffdiff chip-seq rna-seq written 9 months ago by VY120
1
vote
1
answer
241
views
1
answer
Tophat errors with alignment summary and insertions data
alignment tophat rna-seq written 9 months ago by darsha_710 • updated 9 months ago by Jennifer Hillman Jackson22k
3
votes
1
answer
338
views
1
answer
1
vote
1
answer
203
views
1
answer
After loading up RNAseq data, what to do next?
rna-seq written 9 months ago by shuo.li10 • updated 9 months ago by Jennifer Hillman Jackson22k
1
vote
1
answer
446
views
1
answer
TopHat - set metadata manually or retry auto-detection
tophat rna-seq written 9 months ago by avoltz30 • updated 9 months ago by Jennifer Hillman Jackson22k
4
votes
1
answer
273
views
1
answer
cuffdiff conditions related question
rna-seq written 9 months ago by xusiyujune10 • updated 9 months ago by Mo Heydarian600
5
votes
1
answer
185
views
1
answer
HISAT Error on local Galaxy
local hisat rna-seq written 7 months ago by ChickenRNA50
2
votes
1
answer
203
views
1
answer
MACE (Massive analysis of cDNA ends)
galaxy rna-seq written 7 months ago by Philippe10 • updated 7 months ago by Mo Heydarian600
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