Showing: rna-seqreset
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De novo transcriptome analysis pipeline
rna-seq written 4 weeks ago by m_ko10 • updated 29 days ago by Jennifer Hillman Jackson22k
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94
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60
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55
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file format conversion
rna-seq written 4 weeks ago by bassam.abomoelak10
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5
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158
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5
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RNAseq analysis starter
rna-seq written 5 weeks ago by bassam.abomoelak10
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1
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40
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1
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using space bug
software error rna-seq written 4 weeks ago by wsq19930 • updated 4 weeks ago by Jennifer Hillman Jackson22k
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88
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1
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HISAT2 gzip: input_r.fastq.gz: not in gzip format
hisat2 gzip rna-seq written 4 weeks ago by testtoolshed10 • updated 4 weeks ago by Jennifer Hillman Jackson22k
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53
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0
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GALAXY_SLOTS and slashes
tophat multi-processor multi-core rna-seq written 4 weeks ago by apozhitkov40 • updated 4 weeks ago by Jennifer Hillman Jackson22k
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146
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1
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singlecell RNAseq normalisation
singlecell spike_in rna-seq written 4 weeks ago by nadia_boufaied0 • updated 4 weeks ago by Mo Heydarian790
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135
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1
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69
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1
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2
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66
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2
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Getting all unmapped reads
bwa rna-seq written 5 weeks ago by mm418420 • updated 5 weeks ago by Guy Reeves970
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0
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61
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0
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bwa not recognizing fastq files
rna-seq written 5 weeks ago by tkirkland0
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1
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77
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1
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HISAT2 produces no aligned reads
rna-seq written 5 weeks ago by srinivk0 • updated 5 weeks ago by Jennifer Hillman Jackson22k
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1
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51
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1
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Lading SRA files into Galaxy
rna-seq written 5 weeks ago by tkirkland0 • updated 5 weeks ago by Jennifer Hillman Jackson22k
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1
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54
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1
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Long wait times Htseq, featurecounts and Cufflinks
cufflinks galaxy rna-seq written 5 weeks ago by TJ0 • updated 5 weeks ago by Jennifer Hillman Jackson22k
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1
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53
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1
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Uploading fastq files keeps failing
rna-seq written 5 weeks ago by aballest0 • updated 5 weeks ago by Jennifer Hillman Jackson22k
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6
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538
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7 follow
6
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TopHat tool missing?
usegalaxy.org hisat tophat rna-seq written 7 weeks ago by johanvn10 • updated 6 weeks ago by franklin_moreno0
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1
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66
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1
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Request extra space on Galaxy
rna-seq written 6 weeks ago by lgmaia10 • updated 6 weeks ago by Martin Čech ♦♦ 3.9k
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53
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1
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Tophat fails again and again
tophat rna-seq written 6 weeks ago by chayanikagoswami.sgt0 • updated 6 weeks ago by Jennifer Hillman Jackson22k
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1
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127
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1
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0
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1
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70
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1
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Tophat is not anymore among the galaxy tools
tophat rna-seq written 6 weeks ago by franklin_moreno0 • updated 6 weeks ago by Devon Ryan1.6k
3
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3
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104
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3
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SnpEff output searching for specific genes
galaxy snp rna-seq written 7 weeks ago by federico.bernuzzi20 • updated 6 weeks ago by Guy Reeves970
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483
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1
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significant genes not shown in the scatter and volcano plots
rna-seq written 15 months ago by brarp061910 • updated 6 weeks ago by akilabioinfo0
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1
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125
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1
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STAR --> option for reference genome
galaxy star rna-seq written 6 weeks ago by gupta20 • updated 6 weeks ago by Jennifer Hillman Jackson22k
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1
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607
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1
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Inconsistent Cuffdiff Output-Corrected Question
cufflinks rna-seq written 4.9 years ago by i b330 • updated 6 weeks ago by vm.higareda0
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2
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1.4k
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2
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Inconsistency Between Cufflinks And Cuffdiff. This Is Killing Me.
cufflinks rna-seq written 5.1 years ago by Jia Meng10 • updated 6 weeks ago by vm.higareda0
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1
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59
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1
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de novo assembly in Galaxy using multiple transcriptomes
rna-seq written 7 weeks ago by kr_34870 • updated 6 weeks ago by Jennifer Hillman Jackson22k
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1
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69
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1
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0
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2
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51
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2
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Trouble with FASTQ joiner
galaxy rna-seq written 7 weeks ago by nday0
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68
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1
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2
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1
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70
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1
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deseq2 output interpretation problrm
deseq2 rna-seq written 7 weeks ago by shafnaasmy.v.s10 • updated 7 weeks ago by Devon Ryan1.6k
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1
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57
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1
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Deseq2 transcript list classification
deseq2 non coding transcripts ucsc rna-seq written 7 weeks ago by r.saleh0 • updated 7 weeks ago by Devon Ryan1.6k
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1
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180
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1
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Tophat vs HISAT
cufflinks tophat rna-seq written 7 weeks ago by Beatriz Ramos10 • updated 7 weeks ago by Jennifer Hillman Jackson22k
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1
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65
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1
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