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13
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1
answer
5.1k
views
11 follow
1
answer
1
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2
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2.9k
views
2
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Reference Genomes At Local Instance Of Galaxy
galaxy written 6.1 years ago by Yang, Yanming10 • updated 8 months ago by laurent.fournier10
1
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2
answers
2.8k
views
5 follow
2
answers
venv/bin/activate: No such file or directory
local galaxy galaxy venv/bin/activate install written 2.1 years ago by wippermm10 • updated 7 months ago by n.goue40
5
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4
answers
2.2k
views
8 follow
4
answers
4
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3
answers
1.8k
views
3
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fastq to bam
bam written 21 months ago by aaltaytas0 • updated 3 months ago by fp2150
3
votes
2
answers
1.8k
views
2
answers
gff to gtf conversion
rna-seq gtf tophat gff written 17 months ago by computationalvarun20 • updated 11 months ago by Guy Reeves1.0k
1
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2
answers
1.7k
views
2
answers
3
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0
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1.6k
views
5 follow
0
answers
2
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1
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1.4k
views
1
answer
Forum: The Biostar Handbook is out. Perhaps the Galaxy Handbook should be next?
galaxy handbook forum written 16 months ago by Istvan Albert260 • updated 9 months ago by anavisharma345770
3
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5
answers
1.4k
views
5
answers
9
votes
6
answers
1.4k
views
7 follow
6
answers
TopHat tool missing?
usegalaxy.org hisat tophat rna-seq written 10 months ago by johanvn10 • updated 10 months ago by franklin_moreno0
3
votes
2
answers
1.3k
views
2
answers
Local Tophat Error "OSError: [Errno 2] No such file or directory"
samtools local admin tophat path written 18 months ago by deane30 • updated 3 months ago by yusheng_tan0
1
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1
answer
1.3k
views
1
answer
Tophat vs HISAT
cufflinks tophat rna-seq written 11 months ago by Beatriz Ramos10 • updated 11 months ago by Jennifer Hillman Jackson24k
2
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5
answers
1.3k
views
5
answers
1
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2
answers
1.3k
views
2
answers
1
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2
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1.3k
views
2
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cummeRbund SQLite database error from Galaxy main CuffDiff tool
R galaxy cufflinks rna-seq written 2.6 years ago by nevil20 • updated 4 days ago by adoorprabha0
5
votes
8
answers
1.3k
views
6 follow
8
answers
DiffBind on Galaxy
en_us.utf-8 error written 2.2 years ago by j.m.fustin10 • updated 5 weeks ago by Jennifer Hillman Jackson24k
0
votes
2
answers
1.2k
views
2
answers
How to use cuffmerge and cuffdiff
rna-seq written 12 months ago by lrm_19850 • updated 6 months ago by h.jagatia0
3
votes
6
answers
1.2k
views
5 follow
6
answers
How to create GFF file for HT seq
bam rna-seq written 20 months ago by shraddha.adamane10 • updated 3 months ago by Joey Zou0
3
votes
2
answers
1.1k
views
6 follow
2
answers
Phenotype data for Ballgown tool
ballgown galaxy rna-seq written 11 months ago by tamrin.chowdhury40 • updated 3 months ago by rpink10
5
votes
3
answers
1.1k
views
3
answers
salmon gene quant to DESeq2
galaxy rna-seq written 9 months ago by matthew.johnson30 • updated 12 days ago by jevanveen10
0
votes
2
answers
1.0k
views
2
answers
Microrna Seq Data Workflow Analysis
galaxy written 7.8 years ago by Ana Sevilla20 • updated 10 months ago by valasek0
1
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2
answers
1.0k
views
2
answers
Failure to download data from EBI-SRA to a local Galaxy instance
ebi sra download written 3.0 years ago by yu.1.wang20 • updated 5 months ago by mohancm890
20
votes
10
answers
998
views
14 follow
10
answers
Workflow cannot run - Admin: older issue, see 25048 for current
workflow written 15 months ago by wuw11180 • updated 6 weeks ago by a.januszewski10
7
votes
2
answers
989
views
2
answers
2
votes
2
answers
970
views
2
answers
TopHat - set metadata manually or retry auto-detection
tophat rna-seq written 20 months ago by avoltz30 • updated 5 months ago by Wanderer10
2
votes
1
answer
964
views
1
answer
"Unable to finish job" but no errors, data seems to be there?
tophat written 2.6 years ago by Brian Griffiths20 • updated 3 months ago by yusheng_tan0
5
votes
3
answers
955
views
3
answers
Forum: An entertaining read about BWA, Picard, GATK
galaxy software error forum bwa bam samtools written 14 months ago by apozhitkov60 • updated 10 months ago by linying91140
1
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2
answers
901
views
2
answers
1
vote
2
answers
872
views
2
answers
Problem With Downloading
galaxy written 4.8 years ago by GANDRILLON OLIVIER70 • updated 10 months ago by sameerdilipkhot20
1
vote
1
answer
863
views
1
answer
significant genes not shown in the scatter and volcano plots
rna-seq written 2.0 years ago by brarp061910 • updated 10 months ago by akilabioinfo0
2
votes
2
answers
854
views
2
answers
type of file for reference genome
tophat written 3.9 years ago by namratakumari10 • updated 11 months ago by westcott10
0
votes
1
answer
839
views
1
answer
how to convert gene.id to gene name
chip-seq written 10 months ago by mayurdoke10 • updated 10 months ago by Jennifer Hillman Jackson24k
0
votes
1
answer
808
views
1
answer
Inconsistent Cuffdiff Output-Corrected Question
cufflinks rna-seq written 5.7 years ago by i b330 • updated 10 months ago by vm.higareda0
2
votes
1
answer
803
views
1
answer
Get Galaxy locally
galaxy written 2.8 years ago by naguleswaran10
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