Question: Fail to upload data from FTP file
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hzhangatus • 0 wrote:
Dear Sir/Madam,
When I upload my fastq data about 3.5Gb by FileZilla, the status in the upload interface shows error of "Failed: Bad Request (400)".
Thanks for your help!
Looking forward to receiving your solution!
Best!
Hao
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modified 4.0 years ago
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Jennifer Hillman Jackson ♦ 25k
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4.0 years ago by
hzhangatus • 0
That error is what you see in filezilla? Or you see that in the Galaxy upload interface after successfully uploading the complete file via filezilla?
The error occurs in the Galaxy upload interface after successfully uploading the complete file via filezilla.
Does this still occur for you? We've just recently updated this functionality.
Yes, it still occur for me. Actually, I can upload data to our university's Galaxy by FileZilla, but cannot upload it to the official Galaxy, "usegalaxy.org".
When I click Upload File entering to data upload interface. and click Choose FTP file, I can see the data uploaded by FileZilla. But when I choose the data and then click the start button, the error just pop up.
Ok, I'll check through our logs to see if I see a failure on this side.
Or I can give you my account and password to help me figure out the problem.
Actually, can you open the javascript console and see if there's more of an error there when this happens for you?
Thanks for you help! It's so weird that when I change a computer, then it works.
Can you contact me directly with more information about which particular files you're trying to import and to what history?
I can try a few things from the admin side to help debug: dannon.baker@gmail.com
Unfortunately, the error occurs again even if I changed the computer.
The error is:
Traceback (most recent call last): File "/galaxy-repl/main/server/tools/data_source/upload.py", line 409, in <module> __main__() File "/galaxy-repl/main/server/tools/data_source/upload.py", line 398, in __main__ add_file( dataset, registry, json_file, output_path ) File "/galaxy-repl/main/server/tools/data_source/upload.py", line 282, in add_file line_count, converted_path = sniff.convert_newlines( dataset.path, in_place=in_place, tmp_dir=tmpdir, tmp_prefix=tmp_prefix ) File "/galaxy-repl/main/server/lib/galaxy/datatypes/sniff.py", line 109, in convert_newlines fp.write( "%s\n" % line.rstrip( "\r\n" ) ) IOError: [Errno 5] Input/output error