Question: Adding RSeQC tools to web-based Galaxy
gravatar for mmata2
4.1 years ago by
United States
mmata20 wrote:


I'm trying to upload several RSeQC tools to the web-based Galaxy but the information I have found so far does not help. Anyone has tried this before?



rna-seq galaxy • 862 views
ADD COMMENTlink modified 4.1 years ago by Jennifer Hillman Jackson25k • written 4.1 years ago by mmata20

Do you mean that you are trying to install this repository from the ToolShed?

If not please explain in more detail what are you trying to do.

ADD REPLYlink written 4.1 years ago by Martin Čech ♦♦ 4.9k
gravatar for Jennifer Hillman Jackson
4.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:


As Martin mentioned, tools from the Tool Shed cannot be loaded into the public Main Galaxy instance at And from what I know, other public Galaxy instances have the same policy. Administrative permissions are necessary, but beyond the technical criteria, the reason is so that tool content is managed by the instance owner. 

That said, I opened a Trello ticket last summer for the team to consider including this tool on Main. A decision has not been made yet. You can review the request here (and vote on it):

Instructions for Trello (if needed):

To use this tool right now, try a local or cloud Galaxy. More help is here:

Best, Jen, Galaxy team

ADD COMMENTlink written 4.1 years ago by Jennifer Hillman Jackson25k
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