Question: What is the version of GATK in galaxy?
0
gravatar for pes1217
4.0 years ago by
pes121740
China
pes121740 wrote:

Hi,

 

Could anyone tell me the version of GATK in galaxy? I want to install GATK of the same version in our own server. Thanks!

 

Best,

Shaohuan

gatk • 852 views
ADD COMMENTlink modified 3.9 years ago by Bjoern Gruening5.1k • written 4.0 years ago by pes121740
1

This depends on your Galaxy Server. Which one are you using?

ADD REPLYlink written 4.0 years ago by Bjoern Gruening5.1k

I‘m using usegalaxy.org

ADD REPLYlink modified 3.9 years ago by Martin Čech ♦♦ 4.8k • written 3.9 years ago by pes121740
1
gravatar for Bjoern Gruening
3.9 years ago by
Bjoern Gruening5.1k
Germany
Bjoern Gruening5.1k wrote:

Moin,

this should be MACS 1.3.7.1. If you scroll down the MACS page in Galaxy and follow the link in the blue box indicated with 'This tool was installed from a ToolShed, you may be able to find additional information by following this link: ' you will be redirected to the Tool Shed with more information.

Cheers,

Bjoern

ADD COMMENTlink written 3.9 years ago by Bjoern Gruening5.1k

Also every run of the tool should include the GATK version used in its standard output.

ADD REPLYlink written 3.9 years ago by Martin Čech ♦♦ 4.8k
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