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Question: Viewing BIGWIG files in UCSC
0
gravatar for fat9
4.2 years ago by
fat9 • 0
United States
fat9 • 0 wrote:

Hello,

Previously I have been able to view BigWig files by clicking on the job, and selecting Display in UCSC view. As of today I only have the option to view in IGB. I am not sure why this is and would appreciate help in getting my BigWig files to be viewed in the UCSC Genome Browser. Thank you. 
ucsc bigwig • 2.1k views
ADD COMMENT • link •
modified 3.3 years ago by trinna22 • 0 • written 4.2 years ago by fat9 • 0
1

Hi Nate,

I do have the same problem with galGal4 genome. 
Thanks

Nico

ADD REPLY • link written 4.2 years ago by nico • 10
1

This should be fixed now. Please let me know if you're still encountering any issues with it.

ADD REPLY • link written 4.2 years ago by Nate Coraor ♦ 3.2k

Fixed! Thanks a lot ;-)

ADD REPLY • link written 4.2 years ago by nico • 10

Hi thanks Nate. The link still doesn't appear for me on usegalaxy.org. My bigwig files are SacCer3 for yeast. 

All Best,

Frank

ADD REPLY • link written 4.2 years ago by fat9 • 0
1

This should be fixed now. Please let me know if you're still encountering any issues with it.

ADD REPLY • link written 4.2 years ago by Nate Coraor ♦ 3.2k

It is working now! Thank you so much!

ADD REPLY • link written 4.2 years ago by fat9 • 0
1
gravatar for Nate Coraor
4.2 years ago by
Nate Coraor ♦ 3.2k
United States
Nate Coraor ♦ 3.2k wrote:

usegalaxy.org was using an old version of the list of builds available at UCSC. I've fixed this problem, does the link appear for you now? If not, could you let me know what genome build is selected for your bigwig file?
ADD COMMENT • link written 4.2 years ago by Nate Coraor ♦ 3.2k
0
gravatar for trinna22
3.3 years ago by
trinna22 • 0
United States
trinna22 • 0 wrote:

I am having the same issue. used hg38 in galaxy. the only option is to view in IGB. When I try to add the custom track manually in ucsc it also fails. 
ADD COMMENT • link written 3.3 years ago by trinna22 • 0
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