Question: Viewing BIGWIG files in UCSC
0
gravatar for fat9
4.2 years ago by
fat90
United States
fat90 wrote:

Hello,

Previously I have been able to view BigWig files by clicking on the job, and selecting Display in UCSC view. As of today I only have the option to view in IGB. I am not sure why this is and would appreciate help in getting my BigWig files to be viewed in the UCSC Genome Browser. Thank you. 

ucsc bigwig • 2.0k views
ADD COMMENTlink modified 3.3 years ago by trinna220 • written 4.2 years ago by fat90
1

Hi Nate,

I do have the same problem with galGal4 genome. 
Thanks

Nico

ADD REPLYlink written 4.2 years ago by nico10
1

This should be fixed now. Please let me know if you're still encountering any issues with it.

ADD REPLYlink written 4.2 years ago by Nate Coraor3.2k

Fixed! Thanks a lot ;-)

ADD REPLYlink written 4.2 years ago by nico10

Hi thanks Nate. The link still doesn't appear for me on usegalaxy.org. My bigwig files are SacCer3 for yeast. 

All Best,

Frank

ADD REPLYlink written 4.2 years ago by fat90
1

This should be fixed now. Please let me know if you're still encountering any issues with it.

ADD REPLYlink written 4.2 years ago by Nate Coraor3.2k

It is working now! Thank you so much!

ADD REPLYlink written 4.2 years ago by fat90
1
gravatar for Nate Coraor
4.2 years ago by
Nate Coraor3.2k
United States
Nate Coraor3.2k wrote:

usegalaxy.org was using an old version of the list of builds available at UCSC. I've fixed this problem, does the link appear for you now? If not, could you let me know what genome build is selected for your bigwig file?

ADD COMMENTlink written 4.2 years ago by Nate Coraor3.2k
0
gravatar for trinna22
3.3 years ago by
trinna220
United States
trinna220 wrote:

I am having the same issue. used hg38 in galaxy. the only option is to view in IGB. When I try to add the custom track manually in ucsc it also fails. 

ADD COMMENTlink written 3.3 years ago by trinna220
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