Similar posts • Search »

• Server Error - Help Please
  Hi, I am trying to use Galaxy to (1) obtain a multiple alignment file from the genome browser, ...
• how to merge multiple cufflink data in one file
  how to merge multiple cufflink data in one file. what i am expecting is rows will represent gene ...
• Liftover not mapping coordinates from file
  I cannot get LiftOver to work from GRC38 [Human Dec. 2013 (GRCh38/hg38)] to HG19 right now, as al...
• Tophat2 error when using a custom reference genome
  why everytime tophat is showing error with the fastqsanger files ? "ERROR: An error occurred with...
• upload ing problem with internal server error 500
  Hi, I am trying to upload the fastq.gz files to the server and keep getting error message as "Fa...
• TopHat align summary
  Hello, I am using galaxy to analyze RNA seq of 100bp sing end data, sequenced with Illumina 2500...
• mapping tools error: "Remote job server indicated a problem running or monitoring this job"
  Hi, I'm trying to use bwa or bowtie to align paired collection of reads. However, I am continual...
• Unable to convert FASTAQ file into NCBI standered FASTA file format
  Hi I wanted align multiple alignment of several Salmonella Typhi isolates in bioedit software. I ...
• CuffDiff error, "Uncaught exception in exposed API method," job runs, but no results
  Hello, I’ve run into a problem while analyzing some RNAseq data on usegalaxy.com. I am looking...
• mothur silva.nr_v132.align datasets etc
  Good morning, I am trying to run the mothur command align.seqs using the NGS: Mothur tool. I kee...
• Chip Seq analysis with multiple biological replicates for differential expression
  Hello, I am very new to sequence data analysis and had some structural questions. I am trying to ...
• Batch workflow with two different inputs each time?
  Dear Galaxy Community, I have actually installed Galaxy on our cluster, and I am now trying to d...
• MACS2 not working on bam files - possible error with alignment?
  Hi all, I have successfully called peaks on my bam files using earlier versions of MACS, however...
• Mothur not working. Libboost error message
  Here is the error message I am receiving. Anything I can do about it, or anything that I am doing...
• Manage Jobs Tool Error
  Hello, We recently pulled the latest changes from the galaxy repository in to our new server Our...
• FreeBayes "error while loading shared libraries"
  While using Freebayes for VCF manipulation, I encountered the following error:- "freebayes: error...
• analysis of tophat results
  hi i have done qc and then groomed single end sra sequences from ebi. i ran tophat. i am getting...
• Teaching Using Galaxy
  Hi everybody! I am currently creating a "bioinformatics" course for undergraduate (biology stude...
• What to do when alignment rate is low even though the genomic data and RNA-seq data are of same stain
  Hello While doing RNA-seq analysis, when I mapped reads for each condition to the reference gen...
• Reference Annotation error using HISAT2
  I keep getting a reference annotation error when I run cuffdiff using HISAT2 alignment files. The...
• cuffmerge-Use Sequence Data
  Hi! I am using cuffmerge to merge 6 different transcripts.gtf generated by cufflinks. When I exe...