I integrated Qiime into Galaxy using the qiime-galaxy integration ( https://github.com/qiime/qiime-galaxy ). When I try to run any qiime script I get this error:
/bin/sh: 1: split_libraries_fastq.py: not found /bin/sh: 1: compress_path.py: not found
Qiime is in my path and works from the command line. Does anyone know what I may be missing in the configuration that would cause this error?