Question: local toolshed + install attempt = stream ended unexpectedly
0
gravatar for Brad Langhorst
4.4 years ago by
United States
Brad Langhorst100 wrote:

tool_shed.util.repository_dependency_util DEBUG 2014-06-17 21:52:59,928 Building repository dependency relationships...
172.17.1.250 - - [17/Jun/2014:21:52:59 -0400] "POST /admin_toolshed/prepare_for_install HTTP/1.0" 200 - "http://galaxy.neb.com/admin_toolshed/prepare_for_i
nstall?tool_shed_url=http://galaxyhead.neb.com/toolshed/&repository_ids=ed3054ed212a7fd2&changeset_revisions=02161b71246b" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_3) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/35.0.1916.114 Safari/537.36"
transaction abort!
rollback completed
tool_shed.util.hg_util DEBUG 2014-06-17 21:53:29,952 Error cloning repository: stream ended unexpectedly (got 137339 bytes, expected 309260)
tool_shed.galaxy_install.repository_util DEBUG 2014-06-17 21:53:29,963 Removed repository installation directory: /mnt/galaxy/data/galaxy/galaxy-toolshed-tools/galaxyhead.neb.com/toolshed/repos/galaxy-admin/aggregate_results/02161b71246b

 

in the toolshed log:

Exception happened during processing of request from ('127.0.0.1', 57183)
Traceback (most recent call last):
  File "/mnt/galaxy/data/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py", line 1068, in process_request_in_thread
    self.finish_request(request, client_address)
  File "/mnt/galaxy/data/galaxy/sw/lib/python2.7/SocketServer.py", line 334, in finish_request
    self.RequestHandlerClass(request, client_address, self)
  File "/mnt/galaxy/data/galaxy/sw/lib/python2.7/SocketServer.py", line 651, in __init__
    self.finish()
  File "/mnt/galaxy/data/galaxy/sw/lib/python2.7/SocketServer.py", line 710, in finish
    self.wfile.close()
  File "/mnt/galaxy/data/galaxy/sw/lib/python2.7/socket.py", line 279, in close
    self.flush()
  File "/mnt/galaxy/data/galaxy/sw/lib/python2.7/socket.py", line 303, in flush
    self._sock.sendall(view[write_offset:write_offset+buffer_size])
error: [Errno 32] Broken pipe
----------------------------------------

 

Is this a bug? Somthing odd about my toolshed or this repository?

tool • 1.3k views
ADD COMMENTlink written 4.4 years ago by Brad Langhorst100
0
gravatar for Bjoern Gruening
4.4 years ago by
Bjoern Gruening5.1k
Germany
Bjoern Gruening5.1k wrote:

Can you try to reset the metadata and maybe give us a link to your repository? Whatever the error causes, Galaxy should catch the error and provide a detailed error message.
 

ADD COMMENTlink written 4.4 years ago by Bjoern Gruening5.1k
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