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• Need help with "Bowtie2" tool
  Although my fasq data is in loaded, why could I not see the fast file in the bowtie2 checkbox? T...
• Need help with "Bowtie2" tool
  .fq file is saved in the history, but does not appear on the 'FASTQ File' dropdown list?   Too...
• Need help with "Feature coverage" tool
  for what purpose it is and what type of input data it needs   Tool name: Feature coverage Tool...
• Need help with "Filter by quality" tool
  which formet this tool gets?   Tool name: Filter by quality Tool version: 1.0.0 Tool ID: tools...
• Need help with "FASTQ Quality Trimmer" tool
  I am not able to add my file to this tool.     Tool name: FASTQ Quality Trimmer Tool version:...
• Need help with "Mark Duplicate reads" tool
  What is the aim of this tool?   Tool name: Mark Duplicate reads Tool version: 1.56.0 Tool ID: ...
• Need help with "Map with BWA for Illumina" tool
  biuld index   Tool name: Map with BWA for Illumina Tool version: 1.2.3 Tool ID: toolshed.g2.bx...
• Need help with "Map with Bowtie for Illumina" tool - Methanosarcina acetivorans
  Hi there,  Would it be able to include "Methanosarcina acetivorans C2A" in the Reference Genome ...
• Need help with "Map with Bowtie for Illumina" tool
  How long will "This job is waiting to run" take?   Tool name: Map with Bowtie for Illumina Too...
• Need help with "Generate pileup" tool
  Dear, What kind of files should i use to "using reference genome" and where get it? I trying to...
• Need help with "Filter by quality" tool
  Why doesn't this tool recognize my fastq files? It won't let me run the tool on the fastq files I...
• Need help with "Varscan" tool
  In my browser window, Varscan for variant detection does not allow me to add datasets. What is wr...
• Need help with "Barcode Splitter" tool
  i uploaded a fastq file of the output from the sequencing but it is not recognized as a "library"...
• Need help with "Map with Bowtie for Illumina" tool
  nothing happened when clicking the input file dropbox, can not upload files.   Tool name: Map ...
• Need help with "FASTQ Quality Trimmer" tool
  I have uploaded my fastQ file but it is not showing in drop down list of fastQ-Quality Trimmer to...
• Need help with "FASTQ Summary Statistics" tool
  I imported some NGS files from EBI, but they came in the FASTQ.gz format. Is there a way to extra...
• Need help with "Fetch taxonomic representation" tool
  Hello, i need to fetch the HCV sequence from my data set how can i use the fetch-taxonomic-repre...
• Need help with "Principal Component Analysis" tool
      Tool name: Principal Component Analysis Tool version: 1.0.2 Tool ID: toolshed.g2.bx.psu.ed...
• Need help with "Filter sequences by length" tool
  How do I upload my fasta file? No options appear when I click the down arrow? Thanks! Jackie ...
• Need help with "Cuffcompare" tool
  Dear Galaxy team,          Thank you very much for your reply for the last 2 posts. Currently, w...
• Need help with "Unified Genotyper" tool
  Every time I try to use the Unified Genotyper Tool under GATK, I receive the following error mess...
• Barcode limit in "Barcode Splitter" tool
  Hello,  I was wondering what is the barcode limit to be run in the "Barcode splitter" tool. I h...
• Need help with "SICER" tool
  How can you add a genome to SICER in Galaxy?     Tool name: SICER Tool version: 0.0.1 Tool ID...
• Need help with "Filter SAM" tool
      Tool name: Filter SAM Tool version: 1.0.0 Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/sa...