Question: Getting Sequences For Multiple Species From Ucsc
1
gravatar for Farhat Habib
9.0 years ago by
Farhat Habib80
Farhat Habib80 wrote:
Hi all, I am wondering if there is a way to download sequence information from UCSC into Galaxy for multiple species. E.g, looking at a region of the genome for Drosophila melanogaster, you can also see the level of conservation across other insect species. Is it possible to get the sequences from all species that align to that region of the genome in Drosophila. Thanks. -Farhat
galaxy • 1.1k views
ADD COMMENTlink modified 4.6 years ago by Galaxy Community ♦♦ 0 • written 9.0 years ago by Farhat Habib80
1
gravatar for Anton Nekrutenko
9.0 years ago by
Penn State
Anton Nekrutenko1.7k wrote:
Farhat: You can do this by extracting multiple species alignments for regions of interest. Take a look at "Fetch Alignemnts" category of tools and screencast 6 on this page: http://galaxycast.org Thanks, anton galaxy team Anton Nekrutenko http://nekrut.bx.psu.edu http://galaxyproject.org
ADD COMMENTlink written 9.0 years ago by Anton Nekrutenko1.7k
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