Can anyone help me with the following step in Galaxy local tools install. In fact i could able to install tools from tool shed but all installed tools says missing dependency and set dependency in universe.wsgi.ini. i just created folder called dependency_dir and used its path pasted against tool_dependency_dir = dependency_dir in universe.wsgi.ini. And restarted galaxy. but still couldn't run programs. I new to computational analysis and was bench scientist all along. appreciate the galaxy forum for helping me so far. i tried the galaxy server but couldn't wait for the queue.
2. Set directory for tool dependencies
You should set a path to existing directory where Galaxy will store tool dependencies. You should do that by uncomenting and setting valuetool_dependency_dir in the Galaxy config file universe.wsgi.ini.
You can create directory named path/to/galaxy/dependency_dir and the line in Galaxy config will look like this:
tool_dependency_dir = dependency_dir
Restart Galaxy after you modify the config file for changes to take effect.