Question: Column Join Feature
1
Justin Clarke • 20 wrote:
Hi,
I am analysing some RNA-seq data and have two different datasets,
total RNA plus enzyme and total RNA minus enzyme. I used to type in
"column join" in the "Tools" menu on the Galaxy homepage after
uploaded the files in Text delimited format. Column join allowed me to
join two datasets by a hinge column, in this case I would choose
column 1 which would be the chromosome position. I would also be
allowed to fill empty columns with a value of 1. The output would give
me 3 columns, chromosome number (which both datasets shared), reads
for minus enzyme, and reads for plus enzyme. The function would never
reject any chromosome position with reads in one dataset and not the
other. However, I cannot seem to be able to find this function
anymore, and the new function "Join two datasets" seems to only give
me back rows where both plus and minus datasets have reads. Does
anyone else have this problem or know how I could get around it?
Regards,
Justin
Justin Clarke
McDowall Laboratory
Garstang 8.52/8.51
Faculty of biological sciences
University of Leeds
Leeds
LS2 9JT
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modified 4.7 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
4.7 years ago by
Justin Clarke • 20
