Is there a approved way to configure or otherwise use galaxy to
process multiple files with a tool or workflow? Using FASTQ Groomer
on dozens of files individually is excruciating.
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Use a workflow to make this simpler. Put as many steps that are
redundant into the workflow then add an "Input" dataset to the
(this is the important part). In the workflow editor, the "input"
dataset is located in tool list (left column), near the bottom.
Then, when bringing up the workflow to run it, there will be a little
multi-paged icon next the input dataset's label. See the png here:
After choosing inputs, down the page where you click to execute the
workflow there is checkbox option to send the results to a new
This can come in handy sometimes when running on multiple dataset
inputs, since it will sort the output into distinct histories for you.
Not always wanted, but good to know about.
Hopefully this helps,
Look for more here in the upcoming week: