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  Dear all, I'm trying to set up samtools sort command on local Galaxy server. But I can not succe...
• samtools for 32-bit local galaxy
  My local galaxy instance tries to make conda to install samtools each time when I load data. Unfo...
• SAM to BAM of samtools: It can't find built-in reference genome.
  as the title! I installed data manager of samtools index builder. What a strange affair! SAM_to_B...
• Ubuntu 18.04. Samtools missing tool dependencies
  I am working with local Galaxy (Ubuntu 18.04 lts - Galaxy 17.09/18.01/18.05). When I try to insta...
• How to install samtools from shed_tool on local galaxy
  Hi, would you like to show my detailed information to install samtools on local galaxy. The step ...
• Galaxy tool development - how do I get a working samtools?
  I'm trying to develop a Galaxy tool that has samtools 1.5 as a dependency, but nothing I declare ...
• Sam To Bigbed
  Hi, Is it possible to generate a bigbed or bigwig file from SAM (or BAM) file using Galaxy? It lo...
• SAMtools Merge BAM files hangs
  Hi all, I am using TopHat to map RNA-seq reads. My study species is a non-model organism, so I c...
• Problems With Tophat In Galaxy
  Hi, I am trying to align long RNA fatsq formatted files from ENCODE project generated by CSHL. T...
• Galaxy can't find installed samtools when doing BWA mapping
  Hello, I am trying a tutorial on NGS mapping. I installed BWA and samtools from tool_shed, but I ...
• Bowtie2 error on locally installed Galaxy : unable to finish job
  Hi, I've installed a local Galaxy. I used data_manager_fetch_genome_all_fasta to get a galGal4 ge...