Question: Setting Up Galaxy Local Server
0
gravatar for Anusha Nagari
5.6 years ago by
Anusha Nagari10 wrote:
Hi, I am a new user of galaxy and am trying to set up local version of galaxy on my mac. I followed the instructions in this link<http: wiki.galaxyproject.org="" admin="" get%20galaxy="">and successfully installed the local version using the following steps: *mkdir galaxy-python/* *mkdir galaxy-dist/* *ln -s /usr/local/bin/ galaxy-python/python* *export PATH=~/galaxy-python:$PATH* *hg clone https://bitbucket.org/galaxy/galaxy-dist/* *cd galaxy-dist* *sh run.sh* * * I could load galaxy fine for the first time. However after I closed it and tried to run it by sh run.sh, it is giving the following error and am unable to startup galaxy: __import__( "pkg_resources" ).declare_namespace( __name__ ) Traceback (most recent call last): File "./scripts/manage_tools.py", line 12, in <module> from migrate.versioning.shell import main ImportError: No module named migrate.versioning.shell However, I am not able to upload any datasets into galaxy either from UCSC genome browser or from my computer with the following error: An error occurred with this dataset: /Users/anushanagari/Desktop/Softwares/galaxy- dist/lib/galaxy/__init__.py:5: UserWarning: Module site was already imported from /Library/Frameworks/Python.framework/Versions/4.2.30201/lib/python2.5/ site.pyc, but /Library/Frameworks/Python.framework/Version Tool execution generated the following error message: /Users/anushanagari/Desktop/Softwares/galaxy- dist/lib/galaxy/__init__.py:5: UserWarning: Module site was already imported from /Library/Frameworks/Python.framework/Versions/4.2.30201/lib/python2.5/ site.pyc, but /Library/Frameworks/Python.framework/Versions/4.2.30201/lib/python2.5 /site-packages/Enstaller-3.0.9-py2.5.egg is being added to sys.path __import__( "pkg_resources" ).declare_namespace( __name__ ) /Users/anushanagari/Desktop/Softwares/galaxy- dist/lib/galaxy/__init__.py:5: UserWarning: Module pkg_resources was already imported from /Users/anushanagari/Desktop/Softwares/galaxy- dist/lib/pkg_resources.pyc, but /Library/Frameworks/Python.framework/Versions/4.2.30201/lib/python2.5 /site-packages/Enstaller-3.0.9-py2.5.egg is being added to sys.path __import__( "pkg_resources" ).declare_namespace( __name__ ) Could you please help me with this and also provide any additional documentation that could help me in getting to know galaxy better? Thanks in advance! Hoping to hear from you soon! Best, Anusha
galaxy • 1.5k views
ADD COMMENTlink written 5.6 years ago by Anusha Nagari10
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