Question: Setting Up Galaxy Local Server
0
Anusha Nagari • 10 wrote:
Hi,
I am a new user of galaxy and am trying to set up local version of
galaxy
on my mac. I followed the instructions in this
link<http: wiki.galaxyproject.org="" admin="" get%20galaxy="">and successfully
installed the local version using the following steps:
*mkdir galaxy-python/*
*mkdir galaxy-dist/*
*ln -s /usr/local/bin/ galaxy-python/python*
*export PATH=~/galaxy-python:$PATH*
*hg clone https://bitbucket.org/galaxy/galaxy-dist/*
*cd galaxy-dist*
*sh run.sh*
*
*
I could load galaxy fine for the first time. However after I closed it
and
tried to run it by sh run.sh, it is giving the following error and am
unable to startup galaxy:
__import__( "pkg_resources" ).declare_namespace( __name__ )
Traceback (most recent call last):
File "./scripts/manage_tools.py", line 12, in <module>
from migrate.versioning.shell import main
ImportError: No module named migrate.versioning.shell
However, I am not able to upload any datasets into galaxy either from
UCSC
genome browser or from my computer with the following error:
An error occurred with this dataset:
/Users/anushanagari/Desktop/Softwares/galaxy-
dist/lib/galaxy/__init__.py:5:
UserWarning: Module site was already imported from
/Library/Frameworks/Python.framework/Versions/4.2.30201/lib/python2.5/
site.pyc,
but /Library/Frameworks/Python.framework/Version
Tool execution generated the following error message:
/Users/anushanagari/Desktop/Softwares/galaxy-
dist/lib/galaxy/__init__.py:5:
UserWarning: Module site was already imported from
/Library/Frameworks/Python.framework/Versions/4.2.30201/lib/python2.5/
site.pyc,
but
/Library/Frameworks/Python.framework/Versions/4.2.30201/lib/python2.5
/site-packages/Enstaller-3.0.9-py2.5.egg
is being added to sys.path
__import__( "pkg_resources" ).declare_namespace( __name__ )
/Users/anushanagari/Desktop/Softwares/galaxy-
dist/lib/galaxy/__init__.py:5:
UserWarning: Module pkg_resources was already imported from
/Users/anushanagari/Desktop/Softwares/galaxy-
dist/lib/pkg_resources.pyc,
but
/Library/Frameworks/Python.framework/Versions/4.2.30201/lib/python2.5
/site-packages/Enstaller-3.0.9-py2.5.egg
is being added to sys.path
__import__( "pkg_resources" ).declare_namespace( __name__ )
Could you please help me with this and also provide any additional
documentation that could help me in getting to know galaxy better?
Thanks
in advance! Hoping to hear from you soon!
Best,
Anusha