I have a bacterial genome which I divided into bins of 5 bp and
reads in each bin. Now I want to use a sliding window of say 100 bp
count the average. Is there any option in Galaxy that I can do it I
bed file of data.
This appears to be related to your latter question, but if not, please
let us know. The "Make window" tool is a good choice for breaking up
intervals and a tools such as "Line/Word/Character count" and
in the Text Manipulation group can compute some simple statistics on
datasets and lines of data. The tool "Join, Subtract and Group ->
may also be helpful.