Question: Gene Or Transcript Differential Expression Testing
gravatar for i b
5.7 years ago by
i b330
i b330 wrote:
Hi, I am a bit confused about two outputs of cuffdiff: If I want to see if two samples, e.g. treated and un-treated express similar protein levels, what would be best to look at gene differential expression or transcript diff. expression? Thanks, ib
rna-seq cuffdiff • 1.0k views
ADD COMMENTlink modified 5.7 years ago by Leonor Palmeira10 • written 5.7 years ago by i b330
gravatar for Leonor Palmeira
5.7 years ago by
Leonor Palmeira10 wrote:
Hash: SHA1 Hi, proteins are synthetised from transcripts, not from genes, so I wouldn't use gene DE. It can become quite tricky to interpret these for some alternative transcripts. Beast, Leonor. - -- Leonor Palmeira, PhD Phone: +32 4 366 42 69 Email: mlpalmeira AT ulg DOT ac DOT be Immunology-Vaccinology, Bat. B43b Faculty of Veterinary Medicine Boulevard de Colonster, 20 University of Liege, B-4000 Liege (Sart-Tilman) Belgium Version: GnuPG v1.4.10 (GNU/Linux) Comment: Using GnuPG with Mozilla - iQEcBAEBAgAGBQJQFBCdAAoJEKquFGwgRb3zchgH/3bGHlV4igMxp3eDhUCRPK5m Fa1I5Y7fvlSZXCPVjiwpoO1j6uXSiYnNYxGTPWYet4qaTKHee0lRtfPLbXhpC4t+ BgEh8HaCoruUStM9qOG/d0ljWjEwM0QRdw1/oWVvF1mLwYq+LBIZdAw0yR/9bTYo xvdmd7Qd+bDq/vh8vR4gn/Cr6oOoB16eMz++X+DXk7pUuQXXxuACt7TEU4tf5Isz ZzlpjVt0a5Y1tYuc5MA4zuhDZzB6u3NEAMzufz3VDgVx/QCX7hKQkSi6rYBaRAmu EdPnLwvVQhOcqaSGz9wSdkkeTHVcE5gmkJ8ZV6re3jua4iI9vW9Lf4ifPQCXamU= =9Frm
ADD COMMENTlink written 5.7 years ago by Leonor Palmeira10
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 47 users visited in the last hour