Galaxy Update

Question: Galaxy Update

9.7 years ago by

Erick Antezana • 120 wrote:

Hi, I have just updated my galaxy install. I was wondering if I can keep the database (users, workflows, etc) from my old install and use them within the new galaxy. Any suggestions to perform this operation so that the new galaxy makes use of all the data/analyses previously done? is there any incompatibility issue? thanks, Erick

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modified 9.7 years ago by Greg Von Kuster • 840 • written 9.7 years ago by Erick Antezana • 120

9.7 years ago by

Greg Von Kuster • 840

Greg Von Kuster • 840 wrote:

Hello Erick, From what repository did you get the update, and what revision did you get? What was your old revision that you were updating? Greg Von Kuster Galaxy Development Team

ADD COMMENT • link written 9.7 years ago by Greg Von Kuster • 840

Hi Greg, I got it yesterday from the mercurial one (http://www.bx.psu.edu/hg/galaxy). I installed it in a different location (with different port [8081])... the contents of the Revision file is: Path: . URL: svn+ssh://coltrane.bx.psu.edu/depot/projects/universe/svnroot/galaxy/t runk Repository UUID: 9bcadc22-80f8-0310-8a53-c8f022958886 Revision: 1349 Node Kind: directory Schedule: normal Last Changed Author: jbhe Last Changed Rev: 1349 Last Changed Date: 2007-02-08 15:12:40 -0500 (Thu, 08 Feb 2007) Properties Last Updated: 2007-01-31 22:47:34 -0500 (Wed, 31 Jan 2007) my old revision was obtained (from mercurial too) last 18 December, this is the contents of the Revision file: URL: svn+ssh://coltrane.bx.psu.edu/depot/projects/universe/svnroot/galaxy/t runk Repository UUID: 9bcadc22-80f8-0310-8a53-c8f022958886 Revision: 1349 Node Kind: directory Schedule: normal Last Changed Author: jbhe Last Changed Rev: 1349 Last Changed Date: 2007-02-08 15:12:40 -0500 (Thu, 08 Feb 2007) Properties Last Updated: 2007-01-31 22:47:34 -0500 (Wed, 31 Jan 2007) both are identical...the only info I have is the dates I got them... actually, the home page of both of my Galaxy installations show at the very bottom the string: Galaxy build: $Rev$ but no REVISION is shown :-( maybe that should be fixed... thanks, Erick

ADD REPLY • link written 9.7 years ago by Erick Antezana • 120

9.7 years ago by

Greg Von Kuster • 840

Greg Von Kuster • 840 wrote:

Hello Erick, OK, instead of checking out a new clone, simply update your existing clone. In your existing repo with rev 1676, perform an "hg pull -u" to update that repo with the latest code. The latest rev includes several new tools, so check the tool_conf.xml.sample file, and add new tools to your tool_conf.xml file if you want. Also, new datatypes are supported, so note any differences between datatype_conf.xml.sample and datatypes_conf.xml, adding the new supported formats to the latter. Let me know if you have any problems. Greg Von Kuster Galaxy Development Team

ADD COMMENT • link written 9.7 years ago by Greg Von Kuster • 840

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