I noticed upon uploading a FASTQ file that the ICGSC version of the
November Chicken genome is available. Why is this not available for
with the tools? Also, is this available for download?
Nicholas Beckloff, PhD
Genomics Core Laboratory Director
Department of Genetics and Genome Sciences
Case Western Reserve University
2109 Adelbert Road
Cleveland, OH 44106
'Chicken Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) (galGal4)'
is currently in the genome builds list as a "database" assignment
choice, but the actual genome data is not incorporated into Galaxy
(yet). This allows data to be labeled and displayed at the UCSC Genome
Browser. As a standard practice, Galaxy includes all UCSC builds, some
that we incorporate native data for and some that we do not (but
The genome galGal4 is on the list of genomes to be added to tools on
public main instance as a native genome in the near term. Meanwhile,
the build with tools using the 'custom reference genome' option.
Galaxy does not host databases, but UCSC does on their downloads
Hopefully this helps,