Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Question About Megablast
0
gravatar for shamsher jagat
6.6 years ago by
shamsher jagat • 590
United States
shamsher jagat • 590 wrote:
I have a question about megablast, I want to megablast my seq: the databases mentioned include (against target databases): htgs27 nt27 wgs 09 phiX174 How can I find details about these databases and which one is human or mouse or may be best for my case. Thanks Vasu
• 678 views
ADD COMMENT • link •
modified 6.6 years ago by Jennifer Hillman Jackson ♦ 25k • written 6.6 years ago by shamsher jagat • 590
0
gravatar for Jennifer Hillman Jackson
6.6 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello Vasu, These databases contain sequences from all species in the divisions. The number indicates the release version. The actual source is: ftp://ftp.ncbi.nlm.nih.gov/blast/db/FASTA/ A description of each division's contents can be found at: http://www.ncbi.nlm.nih.gov/genbank The exception is this single-species genome: http://en.wikipedia.org/wiki/Phi_X_174 Hopefully this helps, Jen Galaxy team
ADD COMMENT • link written 6.6 years ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 177 users visited in the last hour