Question: Clustal Error During Bowtie Run (Public Server)
gravatar for Hemarajata, Peera
6.7 years ago by
Hemarajata, Peera40 wrote:
Dear all, I was trying to use Bowtie on the public server to align my groomed paired reads to a reference FASTA file. My FASTA contains sequences of 7 contigs (so 7 sequences altogether). After a while this error showed up: Job output not returned by PBS: the output datasets were deleted while the job was running, the job was manually dequeued or there was a cluster error. I re-checked the format of the FASTA file and it looked ok. No illegal character. Would anybody be able to suggest what I can do to fix this? Thank you! Peera Hemarajata, M.D. Advanced graduate student - Versalovic lab Department of Molecular Virology and Microbiology - Baylor College of Medicine Department of Pathology - Texas Children's Hospital Suite 830, 8th Floor Feigin Center. Tel: 832-824-8245
alignment bowtie • 762 views
ADD COMMENTlink modified 6.7 years ago by Jennifer Hillman Jackson25k • written 6.7 years ago by Hemarajata, Peera40
gravatar for Jennifer Hillman Jackson
6.7 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hi Peera, This error was caused by a network problem on our cluster, that has been resolved. Please let us know if you have any further problems running this tool. Sorry for the inconvenience, and thanks for using Galaxy, Best, Jen Galaxy team -- Jennifer Jackson
ADD COMMENTlink written 6.7 years ago by Jennifer Hillman Jackson25k
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