Data Not Uploading In Local Instance

Question: Data Not Uploading In Local Instance

6.8 years ago by

Luciano Cosme • 220 wrote:

*Hi Everyone, I have been running a Local Galaxy instance for a long time, but now I am having some problems with uploading data. I am getting the following error:* Can't create peek [Errno 2] No such file or directory: '/home/koala2/galaxy-dist/database/files/000/dataset_13.dat' * and from the Terminal:* 127.0.0.1 - - [25/Feb/2012:17:45:00 -0500] "POST /library_common/library_item_updates HTTP/1.1" 200 - "http://127.0.0.1:8080/library_common/browse_library? sort=name&operation=browse&f-description=All&f-name=All&f-deleted=Fals e&cntrller=library_admin&async=false&show_item_checkboxes=false&webapp = galaxy&id=f2db41e1fa331b3e&page=1" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" * I reinstalled Unbutu and still having the same issue. I also removed Postgresql 9.1 and reinstalled it. I that it might be an issue with postgresql and not Galaxy, but I am not an expert. Any suggestions will be appreciated. Thank you. Luciano *

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modified 6.8 years ago • written 6.8 years ago by Luciano Cosme • 220

6.8 years ago by

Luciano Cosme • 220

Luciano Cosme • 220 wrote:

I have python 2.7 and it seems to be the problem with it. Just formated the partition I had linux and fresh install everything and still have same problem. I did what is recommended here too. Check your Python version Galaxy's core functionality is compatible with *Python* versions *2.5*, *2.6 *, and *2.7*. (Version 2.4 support was last included in the November 18, 2011 Distribution<http: wiki.g2.bx.psu.edu="" devnewsbriefs="" 2011_11_18#p="" ython_support="">). Before reporting bugs, please ensure that python --version reports one of these three versions. If this is not the case, a simple solution is to manipulate your shell's $PATH variable to place the correct version first. This can be done for only Python by creating a new directory at the front of $PATH and creating a symbolic link to python in that directory: Toggle line numbers <http: wiki.g2.bx.psu.edu="" admin="" get%20galaxy#=""> 1 <http: wiki.g2.bx.psu.edu="" admin="" get%20galaxy#ca-="" 78df7933c2e9e4b1411a7e60fd3087c684c79664_1=""> % mkdir ~/galaxy-python 2 <http: wiki.g2.bx.psu.edu="" admin="" get%20galaxy#ca-="" 78df7933c2e9e4b1411a7e60fd3087c684c79664_2=""> % ln -s /path/to/python2.5 ~/galaxy-python/python 3 <http: wiki.g2.bx.psu.edu="" admin="" get%20galaxy#ca-="" 78df7933c2e9e4b1411a7e60fd3087c684c79664_3=""> % export PATH=~/galaxy-python:$PATH

ADD COMMENT • link written 6.8 years ago by Luciano Cosme • 220

Hi Luciano, I am going to forward you question over the to galaxy-dev@bx.psu.edu mailing list where the development community will see and provide feedback to your question: http://wiki.g2.bx.psu.edu/Support#Mailing_Lists Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support

ADD REPLY • link written 6.8 years ago by Jennifer Hillman Jackson ♦ 25k

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