Question: Galaxy - Table Browser Fasta And Bef Format
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gravatar for Rita Rebollo
6.3 years ago by
Rita Rebollo20
Canada
Rita Rebollo20 wrote:
Hello, I got an unexpected scientific result from a simple "get data" from UCSC table browser with galaxy. I have uploaded the mouse mm9 repeat masker track with a filtering on repClass = LINE SINE LTR DNA If I ask the output to be sequences, I will get 1 454 739 sequences, but if I ask the same data to be retrieved as a BED format I get roughly 3 600 000 which is the closest to the "summary/statiscs" of the dataset (item count = 3 493 484). Why is there a difference between the FASTA file and the BED file? Thank you Rita
galaxy • 685 views
ADD COMMENTlink written 6.3 years ago by Rita Rebollo20
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