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Question: Recent Problematic Change In The Galaxy Toolshed
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gravatar for Florent Angly
6.9 years ago by
Florent Angly • 370
Florent Angly • 370 wrote:
Hi, I just tried to upload a new version of the Grinder Galaxy wrapper to the Galaxy ToolShed and am encountering difficulties that I did have in previous versions. When I upload my .tar.gz file, the upload is aborted and I get the error: When I remove my tool_data_table_conf.xml.sample file from the tarball and try re-uploading, I get this warning: These two messages are contradictory. Also, if I am not allowed to define a new datatable with this name, how I am suppose to have a tool use data tables? Thanks, Florent
galaxy • 853 views
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modified 6.9 years ago by Greg Von Kuster ♦ 810 • written 6.9 years ago by Florent Angly • 370
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gravatar for Greg Von Kuster
6.9 years ago by
Greg Von Kuster ♦ 810
Penn State University
Greg Von Kuster ♦ 810 wrote:
Hello Florent, Sorry you encountered this issue. It results from a recently introduce typo in the tool shed code when uploading into a repo that depends on tool data table entries. I've corrected the problem in the tool shed. I also inspected your repository that contains the grinder tool and noticed that the state of the repository was such that the tool_data_table_conf.xml.sample file was added but not committed, so I committed it for you. I also downloaded and installed this repository into my local instance with no problems, so I believe your grinder repository is now in a good state. Thanks very much for reporting this issue. Greg Von Kuster Greg Von Kuster Galaxy Development Team greg@bx.psu.edu
ADD COMMENT • link written 6.9 years ago by Greg Von Kuster ♦ 810
Thank you very much Greg. Florent
ADD REPLY • link written 6.9 years ago by Florent Angly • 370
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