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Question: Error Handling In Galaxy Workflows ?
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gravatar for John Major
6.9 years ago by
John Major • 40
John Major • 40 wrote:
Hi All- Is there any plumbing in place for handling errors that occur in component tools of workflows? I'm thinking about a case where you might want to follow path 'A' if a tool succeeds, but path 'B' if there is some specific kind of exception, and fail completely if any other error is thrown. If this is in place, a pointer to the relevant docs would be awesome. I've looked around and did not come up with anything. Thanks! John
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modified 6.9 years ago by Jennifer Hillman Jackson ♦ 25k • written 6.9 years ago by John Major • 40
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gravatar for Jennifer Hillman Jackson
6.9 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello John, Conditionals and other workflow job control functions have been discussed by the team recently. I have opened a bitbucket ticket to hold ideas from the team and community. Please feel free to add comments for your specific use case. This ticket would also be a good place for you to track the status of future developments in this area: http://bitbucket.org/galaxy/galaxy-central/issue/697/workflow-job- control-functions While there are no immediate development plans, we know that this is of value to our community and so it will continue to be on our list of projects to consider for prioritization going forward. Thanks for using Galaxy! Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support
ADD COMMENT • link written 6.9 years ago by Jennifer Hillman Jackson ♦ 25k
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