Welcome to Galaxy Biostar! User support for Galaxy!
Add New Post
Small Rna Analysis
6.1 years ago by
I posted this question previously- IS there any work flow for analysis of microRNA/ small RNA in galaxy, please. I have run microRNA sequencing for control and treated cells. Thanks
• 1.1k views
Follow via messages
Follow via email
Do not follow
modified 6.1 years ago by
6.1 years ago
6.1 years ago by
Hi, I have been using Galaxy for manipulation of data sets and you can run analysis on DSAP
or use miRNAkey
. Well there are other options as well, but these are pretty easy to use. Luciano
6.1 years ago
to add an answer.
Similar posts •
small RNA-seq data analysis
Hello, I have a couple of questions. Do you have a pipeline for small RNA-seq data analysis? Also...
ERROR WHEN RUNNING AN RNA STYAR ANALYSIS
Hello all. I´ve tried to run an analysis with RNA STAR but I´ve immediatly got the following err...
Human RNA-Seq paired-end libraries
Hello, I would like to study and doing exersizes in RNA-seq analysis that are based on paired-en...
Non-Coding Rna Annotation
Hi all, I am analyzing my small RNA sequencing data on mouse tissue. Does anyone know where to do...
RNA-seq analysis for a small number of genes
Hi all, I am new to RNA seq analysis and want to look at the expression of a small number of gen...
Trimming Adapters for Illumina Small RNA Libraries
Does anyone know exactly which sequences I should be clipping on an Illumina Small RNA library be...
Query Regarding Rna-Seq Data Analysis
Hi, I am having a fastq file for my RNA data analysis in my computer. How to make it available f...
Rna Seq Analysis
Hi I have a couple of questions regarding RNA seq analysis. My questions are 1.I need to use a v...
Small Rna Mapping
Dear Galaxy Team, I was recently pointed to your website to analyse my NGS data, my primary inte...
Job Running Speed Is Really Slow
Dear Galaxy team, I found glalaxy (website) is running really slow today. I just did some text m...
Cufflinks assembles very small number of transcripts from RNA-seq data
I mapped RNA-seq data to reference genome and tried to assemble transcripts using cufflinks.It is...
Bacterial RNAseq in Galaxy
Is there a workflow to follow alignment of bacterial RNAseq. I want to align FAStq file and then ...
Can Galaxy be used for straned RNA seq analysis
My question is as the title. I am wondering whether galaxy can be used for the stranded RNA-seq a...
Trimming Small Rna
Hello everybody, I have sequences of small RNA's from 18 to 35nt and accurate trim the sequences...
RNA-SEQ analysis tutorial
Hi, i am a new user to Galaxy and interested to start RNA-SEQ analysis. for this purpose, i need ...
Sparse (discrete) q values with Cuffdiff
Hello everyone, Maybe this is more a question of statistics than bioinformatics but I thought yo...
RNA Analysis cufflinks
How long does cufflinks usually take to run on RNA analysis? I had it running for about an hour a...
RNA STAR FATAL PARAMETER ERROR: limitGenomeGenerateRAM=31000000000is too small for your genome
I am running RNA STAR to align RNA seq reads to the X. laevis transcriptome, which I uploaded fro...
Bowtie trouble for aligning small RNA reads
Hi there, I’ve been trying to use Bowtie to align my small RNA NGS reads (fastq groomed, for San...
Use of this site constitutes acceptance of our
Traffic: 110 users visited in the last hour