Question: Cufflinks Transcript-Extract
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dongdong zhaoweiming • 110 wrote:
Hi,
I use cufflinks to assemble my RNA-Seq reads which produced a GTF
file, such as follows:(1)chr1 Cufflinks transcript 6234876
6235400 1000 +chr1 Cufflinks exon 6234876 6235060 1000
+chr1 Cufflinks exon 6235239 6235400 1000 + (2)chr1
Cufflinks transcript 6230065 6230437 1000chr1
Cufflinks exon 6230065 6230437 1000 I want to extract
transcrip sequence from the (1) and (2). But fetch sequence could only
extractgenomic sequence, it only fit for transcrit which had one
exon,so are there any other tools to extract transcripts which had >=2
exons sequence and combine it? Thanks a lot!weimin zhao
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modified 7.1 years ago
by
vasu punj • 360
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written
7.1 years ago by
dongdong zhaoweiming • 110
