I WANT TO ALIGNMENT MILLIONS OF SEQUENCES FROM A sRNA LIBRARY WITH A
GENOME (2600 BASES). HOW CAN I DO THIS ALIGNMENT IN GALAXY?. I HAVE
WITH MULTIPLE ALIGNMENTS FROM TOOLS, BUT I CAN NOT SELECT BOTH FILES.
THANKS FOR YOUR HELP
This message has been scanned for viruses and
dangerous content by MailScanner, and is
believed to be clean.
For tools that allow a custom genome, the form will include an option
use a "Dataset from the history" (or similar). Then a sub-menu will
up where the reference genome can be selected.
For the query sequences, Fastq or fasta format may be required. After
upload, make certain the datatype is a fastq version and then run
Groomer". Most alignment tools require a groomed file.
For the target genome, fasta format is required. After upload, this
be assigned if needed on the ""Edit Attributes" form (click on pencil
Hopefully this helps,