Question: Extracting 18S Rrna Sequence
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gravatar for Adam Stell
6.8 years ago by
Adam Stell10
Adam Stell10 wrote:
So I am new to Galaxy. Is there a way to search for 18S rRNA sequences in my metagenomes?
galaxy • 743 views
ADD COMMENTlink modified 6.7 years ago by Jennifer Hillman Jackson25k • written 6.8 years ago by Adam Stell10
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gravatar for Jennifer Hillman Jackson
6.7 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Adam, While Blast is not on the public server, it can be integrated into a local or cloud instance and the query rRNA sequence compared to the genomes. Results and genome data can be uploaded (use FTP), parsed (see: NGS: Mapping -> Parse blast XML output, and analyzed in either your own instance or at the public site. Details to set up your own instance and obtain tool wrappers are in our wiki: http://getgalaxy.org http://galaxyproject.org/wiki/Tool%20Shed Regards, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/Support
ADD COMMENTlink written 6.7 years ago by Jennifer Hillman Jackson25k
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