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• Database Of C_Briggsae_Ws230 For Snpeff
  Hi, Using SnpEff in the Galaxy main server, I need the Caenorhabditis briggsae genome as a refer...
• Snpeff
  Hello, I would like to use SNPeff for annotation through GATK, However when I upload my file it s...
• Need help with "SnpEff" tool
  Hi there, I'm trying to run SnpEff on Galaxy, but the only Genome that it gives me access to is ...
• Work with protein sequence in snpeff?
  Hi, I am knew to bioinformatics and I would like to know if it is possible to run the snpeff on ...
• SnpEff supports only genomes of two species?
  Under usegalaxy, I was trying to use SnpEff to annotate my VCF, but the genome dropdown list show...
• Need help with "SnpEff" tool
      Tool name: SnpEff Tool version: 1.0 Tool ID: toolshed.g2.bx.psu.edu/repos/pcingola/snpeff/...
• Support For Other Genomes In Snpeff
  Hello, My name is Diego and am currently trying to use SNPeff to annotate some variants called fr...
• Genome source from history in SnpEff
  Hello, I am using SnpEff in Galaxy to add variant information to my vcf file. Please let me ask 2...
• Variant Annotation In Galaxy
  Hallo Galaxy users, I would like to annotate variants (in vcf file) found in my bacterial genome...
• SNPeff error SSL ?
  Hello here, I want to install SNPeff on my local instance. Unfortunately SNPeff download for ref...
• snpEff gene names
  Hello! I am new to snpEff. I built my database for my sample using gff3 files created from PROKK...
• Snpeff 2.0.2 Wrapper Problem / Partial Fix
  Hi Pablo, We recently installed 2.0.2 SnpEff at the UAB Galaxy instance (thanks for adding those...
• PAR CLIP T to C change analysis
  Can you please tell me how can I look for T to C changes in my PAR CLIP data. It would be really ...
• SnpEff output searching for specific genes
  Hi, I have successfully runned SnpEff. The ouput VCF file contains 2.5 million "lines", data set...
• Filtering for the frequency of ALT alleles
  Hi, When running CloudMap unmapped mutant workflow, I get a SnpEff file with Homozygous or heter...
• Running SnpEff on Galaxy
  Hello, I would like to annotate a .vcf file and also summarize possible effects variants can hav...
• Filtering Variants using Snpsift filter and SnpEff
  Hi, I have a bunch of variants in .VCF file which I got through the unified genotyper tool. Now ...
• Breakdancer Perl/C++ recommendation
  Hi, I use Breakdancer in order to identify structural variations in BAM files. There are two ver...
• Snpeff On Human Genome
  Hi, Is it possible to use SNPeff with genomes other than worm. This seems to be the only option...