Question: RNA-seq : problem with gene ID
0
gravatar for apcherchloe
5 weeks ago by
apcherchloe0 wrote:

Hi all, It's the first time for me on galaxy and I have some problem.

After the Deseq2 analyses, I have an excel tab with many genes. I try to choose some gene that have a big fold change with a good p-value.

But then I can't identify my gene. I have this kind of gene ID :

440823
9145
55964
23544

How convert this gene ID to identify them on gene ontology?

Thanks, Chloé !

gene convert name deseq2 rna-seq • 67 views
ADD COMMENTlink modified 5 weeks ago by Jennifer Hillman Jackson25k • written 5 weeks ago by apcherchloe0
0
gravatar for Jennifer Hillman Jackson
5 weeks ago by
United States
Jennifer Hillman Jackson25k wrote:

Hi,

These are Entrez gene identifiers.

To capture the associated GO assignments, use the tool: annotateMyIDs annotate a generic set of identifiers (Galaxy Version 3.5.0.1)

To convert to other gene identifier formats, use the tool: UniProt ID mapping and retrieval

Thanks! Jen, Galaxy team

ADD COMMENTlink written 5 weeks ago by Jennifer Hillman Jackson25k
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